Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33840 618 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33860 613 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33830 585 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33810 385 / 6e-128 Glycosyl hydrolase superfamily protein (.1) AT4G38650 372 / 2e-122 Glycosyl hydrolase family 10 protein (.1) AT4G33820 368 / 8e-121 Glycosyl hydrolase superfamily protein (.1) AT2G14690 357 / 2e-116 Glycosyl hydrolase superfamily protein (.1) AT4G38300 216 / 6e-66 glycosyl hydrolase family 10 protein (.1) AT4G08160 189 / 1e-51 Atxyn3 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1.2) AT1G58370 188 / 6e-51 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033786 [exp] 711 / 0 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 702 / 0 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 431 / 2e-141 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10025054 [exp] 377 / 1e-124 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 313 / 5e-100 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014646 [exp] 305 / 1e-97 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10033787 [exp] 273 / 1e-88 AT4G33860 266 / 2e-86 Glycosyl hydrolase family 10 protein (.1) Lus10037528 [exp] 204 / 6e-56 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 195 / 7e-53 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087900 [exp] 682 / 0 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 503 / 2e-173 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 471 / 7e-161 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 452 / 4e-154 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.004G173300 [exp] 397 / 3e-132 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.002G113066 [exp] 192 / 8e-53 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113132 [exp] 191 / 7e-52 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10020985 pacid=23148963 polypeptide=Lus10020985 locus=Lus10020985.g ID=Lus10020985.BGIv1.0 annot-version=v1.0 ATGTCGATGGATCGTACCTTAATACACTCGTGCTTGGAAGTTCCCCATAAGCCTCAATACAAGGGAGGAATCATAGTAAACCCTGACCTGAACAACGGGT TACAAGGATGGTCCCGACTCGGAAACCCACAACTCGAACACAGATCAGTATCGGAAACCAGTAACAACAGCTTCATTGTTGCACATTCCAGAACTCAACC TAATGACAGTGTCTCTCAGAAGGTTTACTTACGAAAGGATCGCCTTTACTCCTTCTCAGCTTGGATACAGGTGAGTGGTAAAGAGAATGTTGCAGTGACA GCAGGGTTCAAGACATCAAATGGTGTGTCCATAGCCGCGGGAGCCGTTGTAGCTGAGCCTGGTTGCTGGTCTATGCTTAAAGGCGGCCTTACTGTGAGTA CATCAGGCATCGCTTATCTCTACTTTCGCAGCAGAAATTCTGCGGTGGATGTATGGATCGACTCTGTTTCCTTGCAACCATTCACTCATCAGGAATGGAA GAATCATCAAGATCAAAGCATAGAGCAGGTTCGGAAGCGGAAAGTAAAGATCCAAGTAGTGGATACACAGGGGAATCCCCTGCCGAATGCAACAGTTTCC GTCCAACAAAACGCCAACAGTTTCCCATTCGGATGCGCCATCAACAAAAACATCCTCACCAACGGCGCCTATCAAAACTGGTTCACATCAAGAGGGTTCA GCGTAACAGCGTTTGAGAACGAGATGAAATGGTACAGCACCGAGTACTCGAGAGGACGCGAAGACTACTCTACAGCGGATGCCATGCTTCAGTTTGCCAA GAAACACAACGTGGCTGTCCGTGGCCACAACGTGGTGTGGGACGATCCAAGGTACCAGCCAGGATGGCTAAGCTCGCTCCCTCCTCGTGAATTCGGAAGC GCTGTAAGGACCAGGATCAATTCCGTTGTGTCGAGGTACAAAGGCCAAGTCATTGCCTGGGATGTTGTGAACGAGAATTTGCACTTCTCCTTTCTTGAGA GCAAACTTGGGAAATACGCTTCTTCTCTGGTTTACAATTTAGCATACAAAGCTGATGGTGGATCGACTCCTTTGTTCCTCAACGAGTACAACACCATTGA AGAAAGAAGAGACCCTGACTCGACACCTGCAAGGTATCTACAGAAGCTTAGAGAAATCAGAAAGTTTAATGACAACTACAAGATTAATTTCGGGATCGGG GCCGAGTCTCATTTCGAAGGGAATCCTAACATTCCTTACATGAGAGCATCTATCGACACTCTTGCTGCTGCAAAACTACCCATTTGGCTAACCGAGATTG ATTTTCAAGGGAGCTCCTCAACTCAGGCGGGTTACTTGGAGCAAGTTTTGAGGGAAGGCCATGCACATCCAGCCGTACAAGGAATAGTAGTTTGGGGAGC ATGGGCGCCACAAGGTTGCTACAGAATGTGCTTGACAGATAACAATTTCAGGAACCTCCCAACTGGGGATGTCGTCGACAAGCTTCTGCACGAATGGGGT CACCGTACTGCTGGACCTTCTTCTTCGTCTTCTTATGTCGTTGGCGAAACTGACGAAAATGGATACATGGAGACTTCACTTTTCCTTGGAGACTACAATC TATCAATTACTGCTGGGGATTCATCTGTTGCCGCCGAAAGGCTTTTGGTGCATTCAACCACCAACCAACCTTTGCTTCTTCTTCAAGCCACAACATGA
AA sequence Show only first row Show all	>Lus10020985 pacid=23148963 polypeptide=Lus10020985 locus=Lus10020985.g ID=Lus10020985.BGIv1.0 annot-version=v1.0 MSMDRTLIHSCLEVPHKPQYKGGIIVNPDLNNGLQGWSRLGNPQLEHRSVSETSNNSFIVAHSRTQPNDSVSQKVYLRKDRLYSFSAWIQVSGKENVAVT AGFKTSNGVSIAAGAVVAEPGCWSMLKGGLTVSTSGIAYLYFRSRNSAVDVWIDSVSLQPFTHQEWKNHQDQSIEQVRKRKVKIQVVDTQGNPLPNATVS VQQNANSFPFGCAINKNILTNGAYQNWFTSRGFSVTAFENEMKWYSTEYSRGREDYSTADAMLQFAKKHNVAVRGHNVVWDDPRYQPGWLSSLPPREFGS AVRTRINSVVSRYKGQVIAWDVVNENLHFSFLESKLGKYASSLVYNLAYKADGGSTPLFLNEYNTIEERRDPDSTPARYLQKLREIRKFNDNYKINFGIG AESHFEGNPNIPYMRASIDTLAAAKLPIWLTEIDFQGSSSTQAGYLEQVLREGHAHPAVQGIVVWGAWAPQGCYRMCLTDNNFRNLPTGDVVDKLLHEWG HRTAGPSSSSSYVVGETDENGYMETSLFLGDYNLSITAGDSSVAAERLLVHSTTNQPLLLLQATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10020985 [exp]	0	1
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10002187 [exp]	1.0	0.9989
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10005302 [exp]	11.3	0.9825
AT4G34760			SAUR-like auxin-responsive pro...		Lus10028466 [exp]	15.9	0.9905
					Lus10028932 [exp]	20.0	0.9902
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	22.6	0.9901
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	25.9	0.9898
					Lus10033811 [exp]	28.4	0.9897
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	30.6	0.9897
					Lus10022996 [exp]	32.7	0.9897
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	34.7	0.9897

Compare expression of checked genes

Lus10020985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.