Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49980 752 / 0 DNA/RNA polymerases superfamily protein (.1) AT5G44750 125 / 2e-29 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) AT5G44740 107 / 4e-24 POLH Y-family DNA polymerase H (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013870 [exp] 123 / 1e-28 AT5G44750 1025 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Lus10036237 [exp] 99 / 3e-21 AT5G44740 765 / 0.0 Y-family DNA polymerase H (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293600 [exp] 823 / 0 AT1G49980 826 / 0.0 DNA/RNA polymerases superfamily protein (.1) Potri.009G094400 [exp] 133 / 5e-32 AT5G44750 1071 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Potri.003G152600 [exp] 97 / 1e-20 AT5G44740 775 / 0.0 Y-family DNA polymerase H (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00817 [flax] [poplar] IMS impB/mucB/samB family PF11799 [flax] [poplar] IMS_C impB/mucB/samB family C-terminal domain CL0198 [flax] [poplar] HHH PF11798 [flax] [poplar] IMS_HHH IMS family HHH motif
Representative CDS sequence Show only first row Show all	>Lus10020986 pacid=23148961 polypeptide=Lus10020986 locus=Lus10020986.g ID=Lus10020986.BGIv1.0 annot-version=v1.0 ATGGCCGTGGACGCTGAACACGGATCGGCTTTTTCAACAGTAGATAATCATCCGCCCCCCTGGCAATCTTATCACACTGCTTACACCAATTCCAAAGCAG GAATGGATGGAGTAGACAAGGAGAAAGTGCAAAAGGTAGTTTATGAGATGAGTAAGGGTTCGAAATATTTTGAGAATGAGGAAAGGAAAGAAGCCCTTAT AAAGCAGAGAGTAGAAAGCATGCGTGCCCAATGTGCGAAGCTCAAGCCAGCTGATATTTCTTATTGTGAGAAGATAGCGGAGAAAAAAATTATAGAGTTA GAAGCTATGCGTGATCTTTCAAGGACTTGGCTACATGTAGACATGGATGCTTTCTATGCAGCTGTTGAGACACTATCCAATCCATCACTTAATGGAAGAC CAATGGCTGTGGGAAGCACCTCAATGCTCGCAACTGCTAACTATGAGGCACGGAAATTTGGGGTTCGTGCAGCAATGCCAGGATTTATAGCACGCCGGTT ATGTCCGGAATTAATATTTGTTCCGCCTGATTTCAAGAAGTATACTCATTACAGTGAGTTAAGTAGAAAAGTTTTTCAGAAATATGATCCCCATTTCGTC GCTGCTAGTTTGGATGAAGCGTACCTTGACATTACTGAGATATGCAAAGACAGAGGAATTACAGGTGCAGATGTTGCTGAAGAGCTGAGACGAAGTGTTT TCGAAGAGACTGGCTTAACATGTAGTGCTGGAATTGGTCCAAACCGCTTGCTTGCTAAGGTTTGCTCTGACATAAACAAGCCCAATGGGCAATTTGTTCT GCCAAATGATCGAGCAGCTGTTAAGACTTTTATATCATCGCTTCCAATAAGAAAGATCGGAGGCATTGGCAAGGTAACTGAACATATTCTGAGAGATGTT TTTGGAATATCCATGTGTGAGCATTTGCTGCAGAAGGGGGGACTTCTCTGTGCAATGTTTTCTCGTTCCTCAGCAGGTTCAGCACTGACTCACTTGTTCT CGAATTTTTTCCTTTCTGTTGGACTTGGGCTTGGTCAGACGGAAACACCTCAAGTGAGGTCTCGAAAAAGTATGAGCACTGAGAGAACTTTTTCTGCCAC AAATAATGAAGTGCTTCTTTTCCAGAAACTAGCTGAGATTGCTGAGGTGTTGTCTGCCGACCTGCAAAAAGAAGGGCTAAGTGGTCGAACATTGACTCTC AAGTTGAAAACTGCGTCTTTTGAGGTTCGGACAAGAGCTCTTACTTTGCAGAAATTTGTAAGCTCAAATGGCGACGTATTGAAACATGCTTCAAAGTTGT TGAAGGCTGAACTTCCTGTTTCGCTGAGACTAATAGGTTTAAGAGTGTCCCACTTCAGTGCCGAAGAAATTGCCGGTCCGTCTGATCCTACACAGCGAAC TATTACTAGCTTTGTTCAATCAAAGGATAATTGCAAGAAAAAGACGGGAGATGAAAGCTCCACCGACCATAATACTGACCAACATGTCATTGATGACCTC GAAACAGAAACTTTACATAATTATGAGACAGGCGATACGTTTCATAGATGCTATTATGATAGTCGTGATGTCGAGTGTAGTTGTAGGAATAGTGAAAAGG GGGGACATTGTGAAACTTCAAGTAGCAAAATTGTGGAGAAGATGGAATCCTCCAATTCTCCTGAGAAGGAGATGTTCAAGTTAAAAGATGGGAGATCATC TATCACTGCAGAGCTCCAAGGTAGCAGCACTGCTTCTCCCAATGCAAAAGGTGGCTTGTATTGGGTGGATGACTACAAGTGTTCACTGTGCGGGATTGAG ATGCCTCCGAATTTTCTAGATGAAAGGCAAGAACATTCTGATTTCCATCTTGCTGAGAGGCTTCAGAGGGAGGAAGAATCTGGCATCAACTCAACAACTC CTGTGGCACTGAGAAGGCTTCCCCCAAAAGATGATCATCAAGGTGCACGAAAGAAGCAGAGGACATCTCGAAAAGAAGGCAAGCATATTCCAATCGATAA GTTCTTTCCAAAGAGTGATGAGAACCTTTAG
AA sequence Show only first row Show all	>Lus10020986 pacid=23148961 polypeptide=Lus10020986 locus=Lus10020986.g ID=Lus10020986.BGIv1.0 annot-version=v1.0 MAVDAEHGSAFSTVDNHPPPWQSYHTAYTNSKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEALIKQRVESMRAQCAKLKPADISYCEKIAEKKIIEL EAMRDLSRTWLHVDMDAFYAAVETLSNPSLNGRPMAVGSTSMLATANYEARKFGVRAAMPGFIARRLCPELIFVPPDFKKYTHYSELSRKVFQKYDPHFV AASLDEAYLDITEICKDRGITGADVAEELRRSVFEETGLTCSAGIGPNRLLAKVCSDINKPNGQFVLPNDRAAVKTFISSLPIRKIGGIGKVTEHILRDV FGISMCEHLLQKGGLLCAMFSRSSAGSALTHLFSNFFLSVGLGLGQTETPQVRSRKSMSTERTFSATNNEVLLFQKLAEIAEVLSADLQKEGLSGRTLTL KLKTASFEVRTRALTLQKFVSSNGDVLKHASKLLKAELPVSLRLIGLRVSHFSAEEIAGPSDPTQRTITSFVQSKDNCKKKTGDESSTDHNTDQHVIDDL ETETLHNYETGDTFHRCYYDSRDVECSCRNSEKGGHCETSSSKIVEKMESSNSPEKEMFKLKDGRSSITAELQGSSTASPNAKGGLYWVDDYKCSLCGIE MPPNFLDERQEHSDFHLAERLQREEESGINSTTPVALRRLPPKDDHQGARKKQRTSRKEGKHIPIDKFFPKSDENL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49980			DNA/RNA polymerases superfamil...		Lus10020986 [exp]	0	1
AT1G06590			unknown protein		Lus10034176 [exp]	3.0	0.8804
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	7.9	0.8562
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	14.5	0.8017
AT1G28530			unknown protein		Lus10025436 [exp]	15.9	0.8090
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Lus10043365 [exp]	17.7	0.8258
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10026359 [exp]	29.8	0.8311
AT5G08780			winged-helix DNA-binding trans...		Lus10003527 [exp]	32.0	0.7999
AT1G03980		ATPCS2	phytochelatin synthase 2 (.1)		Lus10008241 [exp]	39.4	0.8190
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	40.9	0.8233
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10043360 [exp]	41.6	0.8047

Compare expression of checked genes

Lus10020986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.