Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25270 283 / 6e-93 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G68170 271 / 3e-88 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 244 / 3e-77 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 228 / 4e-71 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 228 / 9e-71 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G30340 226 / 1e-70 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 219 / 1e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 218 / 3e-67 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G37460 216 / 1e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 213 / 5e-65 WAT1 Walls Are Thin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015066 [exp] 355 / 1e-121 AT1G25270 182 / 8e-55 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012691 [exp] 328 / 6e-110 AT1G25270 259 / 1e-83 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020819 [exp] 327 / 2e-109 AT1G25270 262 / 6e-85 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020817 [exp] 318 / 7e-106 AT1G25270 274 / 8e-90 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10031437 [exp] 254 / 4e-81 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10001523 [exp] 253 / 8e-81 AT1G09380 446 / 6e-157 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030168 [exp] 236 / 2e-74 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007862 [exp] 229 / 1e-71 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 227 / 3e-70 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108600 [exp] 381 / 6e-131 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307900 [exp] 308 / 7e-103 AT1G25270 254 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 244 / 2e-77 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 236 / 4e-74 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 231 / 2e-72 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 231 / 7e-72 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 229 / 3e-71 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 228 / 3e-71 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 227 / 3e-70 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 226 / 3e-70 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10020987 pacid=23148972 polypeptide=Lus10020987 locus=Lus10020987.g ID=Lus10020987.BGIv1.0 annot-version=v1.0 ATGGGGAAATTGACATGGAAGGAGAAAATACAAGGGATGAAGCCAGCATTTGTGATGGTTTTGGTGCAGATTTCATTTGCGGTTGTCAATATTTTCTACA AACTCGCAGCCAACGACGGCATGAGCTTGAAGATTATTGTCGTTTACAGATTTCTCTTCGCCTCCGCTTTCATGATTCCTCTCGCCTTCCTCCTAGAAAG GAAGAATCAGCCACCGTTCTCCTGGAAAATTTTGGTGTATGCATTCCTTTGTGGCCTATTTGGAGGATCCCTGGTTCAAAATCTCTACTTGGAAAGCTTG GTGTATACGTCACCAACATTTGCTTCCGCTATGGCGAATCTCGTCCCAGCAGTCACCTTCCTGTTGGCAGTTACCTTCAGGATAGAGAAGGTAAGATTTC GAAGCGCGGGTGGAAAGGCGAAGCTGTTAGGAACGGTAATAGGAATCAGTGGGGCAATGTTGCTCACTTTTTACAAAGGTGCAGTTATGCATATCTGGGC AACACATGTTAACCTCCTCAACAAGACACCACCACCACCACATGATACTCCTCCTCCTCCTAATGTCCACCAACAGAATCGTGGCTTAGGTGCTCTCTTT GCACTTGGCAGTTGTTTCTCCCATGCCCTCTGGCTTATTATTCAGGCAAAAGTGGGAGAGATATACCCGTGTCCATACTCGGCAACAGCATTAATGTGCA TAATGGGATCAATCCAAGCGATTTTATATGCTTTGTGTTCTGAAAGAGATTGGTCTCAATGGAAACTCGGTTGGAACATTAGACTCCTCACCGTCGCCTA CTCTGGTATAGTGGCATCAGGACTGATGGTGACGCTAATAGGTTGGTGCGTGAAGAAACAAGGACCCTTGTTTGTGTCCGTCTTCAACCCTCTCATGCTT GTCTGCGTTGCCCTTGCTTCTTCTTTACTCCTCGATGAACAACTCCACCTTGGAAGTGTACTTGGAACAACATTGATAATATGCGGTTTATACGGAGTAA TATGGGGAAAAAATAAAGAGGCGAAGCAGATGGAAGAAGAACAACAACTTACACCTATGACTAATAACTCACATATCAATATGATGATGAGTGATGGTGC TCCTATATCAAATCTTTTACCTACAGAAACAGTTGGCGATAATGATCAACCTCGAGATACCAGCATTGAAATTATGGTCGTAACTGCTTCCGATAGCACG ACAGACAACAGAGACCACGATGAACACAACTAG
AA sequence Show only first row Show all	>Lus10020987 pacid=23148972 polypeptide=Lus10020987 locus=Lus10020987.g ID=Lus10020987.BGIv1.0 annot-version=v1.0 MGKLTWKEKIQGMKPAFVMVLVQISFAVVNIFYKLAANDGMSLKIIVVYRFLFASAFMIPLAFLLERKNQPPFSWKILVYAFLCGLFGGSLVQNLYLESL VYTSPTFASAMANLVPAVTFLLAVTFRIEKVRFRSAGGKAKLLGTVIGISGAMLLTFYKGAVMHIWATHVNLLNKTPPPPHDTPPPPNVHQQNRGLGALF ALGSCFSHALWLIIQAKVGEIYPCPYSATALMCIMGSIQAILYALCSERDWSQWKLGWNIRLLTVAYSGIVASGLMVTLIGWCVKKQGPLFVSVFNPLML VCVALASSLLLDEQLHLGSVLGTTLIICGLYGVIWGKNKEAKQMEEEQQLTPMTNNSHINMMMSDGAPISNLLPTETVGDNDQPRDTSIEIMVVTASDST TDNRDHDEHN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020987 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002892 [exp]	2.6	0.8963
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	6.5	0.8800
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	7.5	0.8797
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	13.9	0.8809
AT3G52360			unknown protein		Lus10029348 [exp]	14.1	0.8247
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	25.9	0.8455
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10037234 [exp]	26.3	0.8725
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	26.5	0.8737
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10025988 [exp]	28.7	0.8625
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	31.2	0.8609

Compare expression of checked genes

Lus10020987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.