Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19630 569 / 0 Radical SAM superfamily protein (.1) AT1G60230 179 / 4e-52 Radical SAM superfamily protein (.1) AT2G39670 174 / 2e-50 Radical SAM superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005409 [exp] 755 / 0 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1) Lus10002698 [exp] 189 / 6e-56 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2) Lus10000953 [exp] 189 / 8e-54 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10013005 [exp] 147 / 6e-40 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1) Lus10029159 [exp] 102 / 6e-24 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1) Lus10000081 [exp] 85 / 5e-19 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294900 [exp] 627 / 0 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1) Potri.010G040700 [exp] 184 / 9e-54 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1) Potri.008G056500 [exp] 181 / 7e-53 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2) Potri.010G203300 [exp] 66 / 9e-12 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Lus10020989 pacid=23148966 polypeptide=Lus10020989 locus=Lus10020989.g ID=Lus10020989.BGIv1.0 annot-version=v1.0 ATGACTTTCCGATCAATCTTTGACGCTCCGGACCTCCGGAACGAGTTTGAGAAAGCAGGGGTCAGCCTTAACTTCATCCCAGTAGTTTGGAAGCACGTGG TTAAGAACCCTAACTGTGAATGGGATGATATACCGAGTCTTCCTTCTGCTGCATACTCGGTGCTCCATTCAAATTTTAGACCTTTAACTTCTTCCGTTCA GTCTGTAATGGATTCAAGTGATGGGGTTACTACCAAACTCCTCATTAAGCTGCAGAATGGGGCATCTGTGGAGGCAGTTATTATGAGGTATGACAGTAGT CTGGGAAAATATAATGGAAAGACTCGCTCAGGTGGCCCGAGATCAACACTCTGCGTTTCTTCCCAGGTTGGTTGTAAAATGGGTTGCACGTTTTGTGCAA CTGGAAGCATGGGATTCAAGAACAATTTATCATCAGGAGAAATTGTTGAACAATTAGTTCATGCCTCTTGCTTGTCAGATATACGGAATATTGTCTTCAT GGGGATGGGTGAACCCTTGAACAACTATACTATGTTGGTAGAAGCTGTACGTGCTATGTTAGGGCCTCCGTTTCGGCTGTCACCAAAGAAAATAACTGTA TCAACGGTTGGGATTGTGCATGCAATCAACAAGCTGCATAAGGATTTGCCTGGTTTGAACTTGGCAGTATCACTTCACGCTCCTGTTCAGGAAATTCGAT GTCAGATAATGCCGGCAGCTCGGGCCTTTCCATTGGCAAAACTAATGGCAGCTTTGCAAGCATATCAAAAGGAAAGTCAGCAGAAAATATTTATCGAGTA CATAATGCTTGATGAGGTAAATGACCAAGAGCAGCATGCTCATGAGCTGGGGAAATTGCTGGAGACATTTGAAGTGGTTGTGAACTTGATACCTTTCAAT CCTATTGGAAGTTCAAGCCAATTCAGAACCAGCAATGAAGAGAAAGTGTCGAGATTCCAGAAAATTGTGAGAGGTGTGTATGGCATCAGAACGACGGTAC GCAAGGAAATGGGTCAGGATATAAGTGGGGCTTGTGGCCAGCTAGTAGTGAATATGCCTGATAAGAACAAGTCTGCGGTATCTCCGTTGACAGACATCGA AGATCTCCGGCTTTGA
AA sequence Show only first row Show all	>Lus10020989 pacid=23148966 polypeptide=Lus10020989 locus=Lus10020989.g ID=Lus10020989.BGIv1.0 annot-version=v1.0 MTFRSIFDAPDLRNEFEKAGVSLNFIPVVWKHVVKNPNCEWDDIPSLPSAAYSVLHSNFRPLTSSVQSVMDSSDGVTTKLLIKLQNGASVEAVIMRYDSS LGKYNGKTRSGGPRSTLCVSSQVGCKMGCTFCATGSMGFKNNLSSGEIVEQLVHASCLSDIRNIVFMGMGEPLNNYTMLVEAVRAMLGPPFRLSPKKITV STVGIVHAINKLHKDLPGLNLAVSLHAPVQEIRCQIMPAARAFPLAKLMAALQAYQKESQQKIFIEYIMLDEVNDQEQHAHELGKLLETFEVVVNLIPFN PIGSSSQFRTSNEEKVSRFQKIVRGVYGIRTTVRKEMGQDISGACGQLVVNMPDKNKSAVSPLTDIEDLRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	0	1
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	1.4	0.8463
AT1G02290			unknown protein		Lus10018907 [exp]	4.9	0.8207
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	8.1	0.8078
AT5G17070			unknown protein		Lus10008757 [exp]	9.2	0.8185
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	11.0	0.8468
AT3G12350			F-box family protein (.1.2)		Lus10007749 [exp]	14.7	0.8077
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	15.0	0.8262
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	16.5	0.7970
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10041927 [exp]	18.2	0.7660
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10015454 [exp]	20.9	0.7382

Compare expression of checked genes

Lus10020989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.