Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49970 299 / 6e-99 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) AT1G09130 148 / 3e-41 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G17040 125 / 5e-33 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT5G45390 99 / 2e-23 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G66670 95 / 7e-22 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT1G12410 85 / 2e-18 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G02560 85 / 3e-18 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G11750 84 / 3e-18 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT5G23140 74 / 4e-15 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) ATCG00670 69 / 2e-13 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003953 [exp] 617 / 0 AT1G49970 318 / 8e-107 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Lus10012156 [exp] 101 / 2e-24 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10007589 [exp] 100 / 3e-24 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10029891 [exp] 103 / 9e-24 AT3G05510 255 / 1e-79 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10020649 [exp] 93 / 1e-21 AT1G09130 151 / 4e-44 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10040981 [exp] 92 / 5e-21 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10013434 [exp] 91 / 1e-20 AT5G23140 347 / 3e-121 nuclear-encoded CLP protease P7 (.1) Lus10002422 [exp] 86 / 9e-19 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 86 / 2e-18 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089300 [exp] 299 / 5e-99 AT1G49970 459 / 7e-162 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.001G295266 [exp] 185 / 3e-57 AT1G49970 306 / 5e-105 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1) Potri.013G017166 [exp] 138 / 2e-37 AT1G09130 451 / 2e-159 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.003G083300 [exp] 120 / 3e-31 AT4G17040 441 / 2e-157 happy on norflurazon 5, CLP protease R subunit 4 (.1) Potri.004G092100 [exp] 101 / 5e-24 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.003G103300 [exp] 92 / 8e-21 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.004G152900 [exp] 85 / 2e-18 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.014G119700 [exp] 84 / 5e-18 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.002G195200 [exp] 84 / 6e-18 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.009G114001 [exp] 81 / 3e-17 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10020990 pacid=23148955 polypeptide=Lus10020990 locus=Lus10020990.g ID=Lus10020990.BGIv1.0 annot-version=v1.0 ATGGCTACCTCCCTTCTCTCGTCGACCTCTTATCCTTCTACGAATCTTTCCTCCATTCCCTCTGTTGGCCATCCGAAACCGTCATTTATCTCCAATTCGA AGCTTATCTACTCCAGTCACCACAGACTGGCTGTTTCTCCACTGAGATGCTATGCGGAGTCTCAGAACCATATCCCCAAGCAGTTCAGGGAAGAGAATCT CGACGGCGGAGTGAAGGAAAACTTCAAAAATGTGCCCGAAAGGTTGTATGGTCTTACTCCGTCGCAAATGCGAATGTTTATGACCGGAAATAGTCCCATT CAAAGCCTAGCTGAAAGAACGATGGAGGAAAACATTACATCCAAACTTAGCTATCAGGATAATTGCCGGATGTATACTTTATCAGATTTTAACGAAAAGG GTAGGGTTACATCCATGCTTAAAGTTAGAAGGGAAGGTGGCCGGCCAGCTCCTCGTCCTCGTGATCTGCCTTCTAGGTTGTTAGGTGCTCGAATTGTTTA TCTGGGAATGCCGACAGTATCAGCTGTTGCTAAGCATATTATTAGTCAGCTTATGTACTTGAACTATAAAGATTCAACATCACCTATATACCTGTACATA AACTCAACTGGGTCACAGGATTTGGATGGGCAGCTTGTCGGTTCGGAGGCCGGTGCATTTAGTATTGCTGATTATATGTCGATGAGCAGGGCAAAGATAC ATACAGTAAACCTTTCGTTGGCATTTGGTCAAGCTGCAATGCTTCTCTCCCTTGGAACCAAAGGCTGTCGGTATATACAGCCCCACGGTTATACAAAACT TTATCTGCCTTCGGTGTATGAATCAAGTGGGCGGGTGACAGACATGACGATCAAGGCCGAGGAATTAGAGATAAATTCGCGATTCTATCTTGAGCTGTTG TCGGAGGGAACTGGCAAGTCTGAGCAACAACTACTGGAAGATATACATATACCTAAATTTTTCAAGGCACAAGAGGCCATTGACTATGGGTTGGCAGACA ATATTGTAGGGCCTGAGGGTATGAAGCATCTGAAAAAGAAATGGGTACGCTTTCTGTTACACCTCCATCTTCTTCATATTCTCTTCATAGTGCACCTCAT ATTCTTCATAGTGAATCTGAAAAATAAACCTACTATTTTTTCCCACCAGAAGTAG
AA sequence Show only first row Show all	>Lus10020990 pacid=23148955 polypeptide=Lus10020990 locus=Lus10020990.g ID=Lus10020990.BGIv1.0 annot-version=v1.0 MATSLLSSTSYPSTNLSSIPSVGHPKPSFISNSKLIYSSHHRLAVSPLRCYAESQNHIPKQFREENLDGGVKENFKNVPERLYGLTPSQMRMFMTGNSPI QSLAERTMEENITSKLSYQDNCRMYTLSDFNEKGRVTSMLKVRREGGRPAPRPRDLPSRLLGARIVYLGMPTVSAVAKHIISQLMYLNYKDSTSPIYLYI NSTGSQDLDGQLVGSEAGAFSIADYMSMSRAKIHTVNLSLAFGQAAMLLSLGTKGCRYIQPHGYTKLYLPSVYESSGRVTDMTIKAEELEINSRFYLELL SEGTGKSEQQLLEDIHIPKFFKAQEAIDYGLADNIVGPEGMKHLKKKWVRFLLHLHLLHILFIVHLIFFIVNLKNKPTIFSHQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	0	1
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	2.4	0.9388
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	5.5	0.9388
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	6.0	0.9295
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	6.3	0.9276
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10003953 [exp]	6.8	0.9012
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10039091 [exp]	7.3	0.9164
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	11.7	0.9166
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	11.8	0.9237
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	13.0	0.9126
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042427 [exp]	13.5	0.8981

Compare expression of checked genes

Lus10020990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.