Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29320 390 / 2e-134 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 45 / 9e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 42 / 0.0004 PRL1 pleiotropic regulatory locus 1 (.1) AT3G18140 40 / 0.0008 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023861 [exp] 601 / 0 AT1G29320 455 / 2e-158 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041102 [exp] 45 / 5e-05 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10019636 [exp] 45 / 5e-05 AT4G29860 477 / 4e-169 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 44 / 0.0002 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10036428 [exp] 44 / 0.0002 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042333 [exp] 43 / 0.0002 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037500 [exp] 42 / 0.0005 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10014674 [exp] 41 / 0.001 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092400 [exp] 469 / 5e-166 AT1G29320 497 / 7e-175 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G095100 [exp] 461 / 6e-163 AT1G29320 458 / 1e-159 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G168600 [exp] 46 / 3e-05 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G052800 [exp] 43 / 0.0002 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 43 / 0.0003 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 43 / 0.0003 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G012800 [exp] 42 / 0.0006 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.006G000500 [exp] 41 / 0.001 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10020991 pacid=23182440 polypeptide=Lus10020991 locus=Lus10020991.g ID=Lus10020991.BGIv1.0 annot-version=v1.0 ATGCTGATTTGCGGTTTGTGTTACTGTCCAGTGGTTCAGTCTCGAGGCAGTAGCGGGATTCCTCAAGTGGTGGAAAGATGGGGGGACGCCGAGTCCTCCA AATACGTGCTTGCTGCGTCCATTGACGATACTGAGAAGGATCCTTTATTAGCGGTTTCAAGGAAAAATAAGATGATTGAGCTTTTGAATCCTCTAAATGG TGACATTCGTGTCTCGCTATCTCGTGATGCTGGTGCTCAACCTGAAGATGACGATGATGATATTGCTGGCTTGCATTTATTCAAGAGTAACAGATCATCG GGATCATGCTCATTGCTTACGTGTTCGACCAAAGGGAATGCGAGTTTAAGCTCAGTTGACACTACATCTGCAGAAAACAACAGCATTGGTACCTCTAATT CGTGGAAAGTTTCCGCTGCTGGTACAATATTGTGTTCTAAAGTCCATGCAAGTGAGAAGCATGCACTGTTTGGAGGGAAGGGTGTTGAAGTCAATTTGTG GGATCTAGAGAGCACTACTAAGATTTGGGCTGCAAAACCTCCTCCTAAAAACAGCCTTGATATTTTCACCCCAACATGGTTTACATCTGCGACATTCCTC GATGGGGACGATCACAGAAAGTTTGTTGCTGGCACCAACAGCCATCAGGTTCGTGTGTATGATGTTTCTGCTCAACGGAGACCTGTGATATCTTTTGATT TCCGAGAAACTCCCATTAAATCAGTGGCTGAAGATCATGATGGTTACACTGTTTATGTGGGAAATGGGTCTGGTGACCTTGCCTCTTTCGACGCCCGCAC AGGAAAACTATTAGGAAGCTTTTTGGGCAAGTGTTCCGGAAGCATAAGATCCATAGCCAGACATCCAGATCACCCAGTGATAGCATCATGCGGTCTTGAT AGCTACTTACGCATCTGGGATGTGAAGACAAGGCAGCTTCTTTCAGCTACTTTCCTGAAGCAGCATCTCACTTGCGTCGTCTTCGATTCCAAATTCCTCG ACAAACGTTAG
AA sequence Show only first row Show all	>Lus10020991 pacid=23182440 polypeptide=Lus10020991 locus=Lus10020991.g ID=Lus10020991.BGIv1.0 annot-version=v1.0 MLICGLCYCPVVQSRGSSGIPQVVERWGDAESSKYVLAASIDDTEKDPLLAVSRKNKMIELLNPLNGDIRVSLSRDAGAQPEDDDDDIAGLHLFKSNRSS GSCSLLTCSTKGNASLSSVDTTSAENNSIGTSNSWKVSAAGTILCSKVHASEKHALFGGKGVEVNLWDLESTTKIWAAKPPPKNSLDIFTPTWFTSATFL DGDDHRKFVAGTNSHQVRVYDVSAQRRPVISFDFRETPIKSVAEDHDGYTVYVGNGSGDLASFDARTGKLLGSFLGKCSGSIRSIARHPDHPVIASCGLD SYLRIWDVKTRQLLSATFLKQHLTCVVFDSKFLDKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29320			Transducin/WD40 repeat-like su...		Lus10020991 [exp]	0	1
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	4.2	0.8645
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	10.5	0.8787
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	12.4	0.8768
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	17.0	0.8673
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	18.7	0.8690
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	20.7	0.8460
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	20.9	0.8684
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	22.3	0.8308
AT1G30240			unknown protein		Lus10014364 [exp]	24.0	0.8595
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10019535 [exp]	30.9	0.8523

Compare expression of checked genes

Lus10020991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.