Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15790 571 / 0 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G63400 223 / 1e-69 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G21130 212 / 3e-68 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 212 / 4e-68 ROC1 rotamase CYP 1 (.1) AT3G56070 205 / 2e-65 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34870 202 / 2e-64 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G16600 199 / 5e-63 ROC3 rotamase CYP 3 (.1.2) AT2G29960 196 / 2e-61 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G13120 189 / 3e-58 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G62030 186 / 4e-57 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023860 [exp] 709 / 0 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10012059 [exp] 619 / 0 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10027924 [exp] 528 / 0 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 214 / 9e-69 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 212 / 5e-68 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10018746 [exp] 224 / 2e-67 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10024831 [exp] 224 / 3e-67 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10017258 [exp] 201 / 1e-63 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10022012 [exp] 197 / 3e-62 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106200 [exp] 588 / 0 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 582 / 0 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 580 / 0 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 568 / 0 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G130100 [exp] 210 / 1e-67 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 207 / 1e-66 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 206 / 8e-66 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 204 / 5e-65 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 203 / 1e-64 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.005G215800 [exp] 211 / 1e-62 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10020992 pacid=23182341 polypeptide=Lus10020992 locus=Lus10020992.g ID=Lus10020992.BGIv1.0 annot-version=v1.0 ATGGCGCGCCCAAGGTGTTTCTTTGACATAAGCATCGGCGGTGAACTTGAAGGCCGGGTTGTAATCGAACTCTACAACGACATCGTCCCTAAAACCGCCG ACAACTTCAGGGCTCTCTGCACCGGCGAGAAGGGCATCGGTCCCGCCACCGGCGTCCCTCTCCATTTCAAGGGAAGCCGATTCCACCGTGTGATCAAAGG GTTCATGATACAAGGCGGAGACATCTCAGCAGGAGATGGTACTGGCGGGGAATCCATCTACGGGGCGAAATTCGAAGACGAGAATTTCGAGATGAAACAT GAGAGGAAAGGAATATTGTCCATGGCGAATTCGGGCCCTAACACGAATGGTTCGCAGTTCTTCATTACCACAACTCGTACTCCTCACTTGGATGGGAAGC ATGTGGTGTTTGGCAGAGTTGTGAAAGGAATGGGGGTTGTGAGGTCAGTTGAGTTGGTCAACACTGCTGAGGGAGACTCTCCAATTCTCGATGTCGTCAT TGCTGATTGTGGTGAGATCCCTGAAGGCGAGGGTGATGGAGTAATAAATTTTTTTAAGGATGGGGATGAATATCCGGATTGGCCAGTTGACCTTAACGAT AGTTCTGAGGAGCTTACTTGGTGGATGGAGGCTGTGGATTCTATCAAGGCTTTTGGGAATGATCAGTTCAAGAAACAAGACTATAAGATGGCTGTTAGGA AATATCGCAAAGCTTTGCGGTATTTGGATATCTGTTGGGAGAAAGAAGGGATTGATGAAGAGAAGAGTTCAGCGCTGAGGAGGACAAAGTCTCAGATATT CACTAATAGTTCTGCTTGTAAGCTCAAAATGGGGGACGTCAAAGGAGCATTGCTGGACACAGACTTTGCAATTCGTGAAGCAGATAACAATGTCAAAGCT TTGTTTCGCCAGGGACAGGCATACATGGCGCTCAATGACATCGATTCTGCAGTTGAAAGCTTCAAGAAGGCATCGCTGTTGGAGCCAAATGATGCTGGAA TACGAAAGGAGTTGCTTGCTGCTAAGAAAAAGATAAATGCCAGACATGAGCAGGAGAAAAACCAGTACAAGAAGATGTTCCAATAG
AA sequence Show only first row Show all	>Lus10020992 pacid=23182341 polypeptide=Lus10020992 locus=Lus10020992.g ID=Lus10020992.BGIv1.0 annot-version=v1.0 MARPRCFFDISIGGELEGRVVIELYNDIVPKTADNFRALCTGEKGIGPATGVPLHFKGSRFHRVIKGFMIQGGDISAGDGTGGESIYGAKFEDENFEMKH ERKGILSMANSGPNTNGSQFFITTTRTPHLDGKHVVFGRVVKGMGVVRSVELVNTAEGDSPILDVVIADCGEIPEGEGDGVINFFKDGDEYPDWPVDLND SSEELTWWMEAVDSIKAFGNDQFKKQDYKMAVRKYRKALRYLDICWEKEGIDEEKSSALRRTKSQIFTNSSACKLKMGDVKGALLDTDFAIREADNNVKA LFRQGQAYMALNDIDSAVESFKKASLLEPNDAGIRKELLAAKKKINARHEQEKNQYKKMFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10020992 [exp]	0	1
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	16.8	0.7580
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10041057 [exp]	18.2	0.7371
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	24.9	0.7438
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	33.7	0.7262
AT2G37690			phosphoribosylaminoimidazole c...		Lus10005526 [exp]	34.2	0.7088
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Lus10014762 [exp]	35.1	0.7233
					Lus10003273 [exp]	42.8	0.7274
					Lus10000588 [exp]	48.7	0.6572
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	48.9	0.6988
AT4G23885			unknown protein		Lus10003881 [exp]	68.5	0.6302

Compare expression of checked genes

Lus10020992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.