Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49570 418 / 6e-147 Peroxidase superfamily protein (.1) AT5G06730 319 / 9e-108 Peroxidase superfamily protein (.1) AT5G06720 317 / 4e-107 ATPA2 peroxidase 2 (.1) AT5G05340 304 / 2e-102 Peroxidase superfamily protein (.1) AT2G18150 301 / 4e-101 Peroxidase superfamily protein (.1) AT4G36430 301 / 5e-101 Peroxidase superfamily protein (.1) AT2G18140 300 / 8e-101 Peroxidase superfamily protein (.1) AT4G08770 295 / 1e-98 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G08780 295 / 2e-98 Peroxidase superfamily protein (.1) AT5G19890 290 / 6e-97 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023858 [exp] 571 / 0 AT1G49570 361 / 9e-125 Peroxidase superfamily protein (.1) Lus10009901 [exp] 407 / 6e-143 AT1G49570 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10034207 [exp] 303 / 3e-102 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 303 / 3e-102 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 300 / 5e-101 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10004163 [exp] 300 / 1e-100 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 298 / 8e-100 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 297 / 7e-98 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10030148 [exp] 288 / 1e-96 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106400 [exp] 442 / 8e-157 AT1G49570 429 / 2e-151 Peroxidase superfamily protein (.1) Potri.004G144600 [exp] 442 / 1e-156 AT1G49570 400 / 8e-140 Peroxidase superfamily protein (.1) Potri.005G135300 [exp] 392 / 7e-137 AT1G49570 408 / 3e-143 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 319 / 1e-108 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 310 / 5e-105 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.003G214800 [exp] 305 / 2e-102 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.016G058200 [exp] 305 / 2e-102 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.013G154400 [exp] 304 / 2e-102 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 303 / 3e-102 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 298 / 5e-100 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10020994 pacid=23182345 polypeptide=Lus10020994 locus=Lus10020994.g ID=Lus10020994.BGIv1.0 annot-version=v1.0 ATGAGTTACACAAACTTCTTAGCCTTCACTACTTCACTTCTTGTTATAGCTTTCTCTACACTTCATCAAGTCACTCCTTTCCCTTCTTCTTCTTCTTCTT CTCCTTCTTCTTCCGGACCTCTCGATTACAGCTACTACGACCAATCGTGCCCTCGTCTATCCATGATCGTTCGATACGGTGTATGGTCGGCGGTCAACAA TGAGTCCAGAATTGCTGCTTCGTTGCTCCGTCTACACTTCCACGATTGTTTTGTCAATGGGTGCGAGGGTTCGATCCTGCTGGACGACACGGTAGGTTTC AAAGGGGAGAAGAACGCACAAGCGAATCGTGGTTCAGCTAGAGGGTACGAGGTTATAGACAACATCAAAGCTGATGTCGAGAAGGCTTGTCCAGGCACGG TCTCATGCACCGACATACTGGCTCTAGCAGCAAGAGAAGCTGTTGTTTTGACAGGAGGGCCTTATTGGCCAGTTGCATTAGGGAGGAGAGACACGTTGAC TGCTAGTGAAGCAGCCGTTGGTCAACAGTTGCCATCTCCTATCGAGTCCTTGGATGCCATCACTGCAAAGTTCAATTCCAAGGGCCTTGACCTTAAGGAT GTTGTTGTCCTCTCAGGAGCACACACGTTAGGATTTGCACAGTGCTTTCTGATAAAGAGGAGGCTATTCAACTTCAAGGAATCCGGCAAGCCAGACCCGG CACTCGATTCCTCTGCGCTGACGAACCTGCAGGGGAAATGTCCGAACAAGAACGAGTCGAACTCGAACCTCGTCCAGCTCGATTCGACCACGACCCGGTT CGACAACATGTACTACACCAACCTCGTAAACAATGCTGGCCTGCTGGACTCGGATCAAGCCCTGTTGATGAACCCGACAACTGGGGACATGGTCCGGTCC TATAGCTCGAACCAGTATTCATTCTACAGCGACTTCAAAGCATCGATGATGAAGATGGGCAGCGTTGGTGTGCTCACTGGGAAGGATGGTGAGATCAGAA GGAAATGTGGATCTGTGAATTAG
AA sequence Show only first row Show all	>Lus10020994 pacid=23182345 polypeptide=Lus10020994 locus=Lus10020994.g ID=Lus10020994.BGIv1.0 annot-version=v1.0 MSYTNFLAFTTSLLVIAFSTLHQVTPFPSSSSSSPSSSGPLDYSYYDQSCPRLSMIVRYGVWSAVNNESRIAASLLRLHFHDCFVNGCEGSILLDDTVGF KGEKNAQANRGSARGYEVIDNIKADVEKACPGTVSCTDILALAAREAVVLTGGPYWPVALGRRDTLTASEAAVGQQLPSPIESLDAITAKFNSKGLDLKD VVVLSGAHTLGFAQCFLIKRRLFNFKESGKPDPALDSSALTNLQGKCPNKNESNSNLVQLDSTTTRFDNMYYTNLVNNAGLLDSDQALLMNPTTGDMVRS YSSNQYSFYSDFKASMMKMGSVGVLTGKDGEIRRKCGSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49570			Peroxidase superfamily protein...		Lus10020994 [exp]	0	1
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Lus10035016 [exp]	6.9	0.8873
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10037816 [exp]	10.8	0.9230
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10023918 [exp]	12.8	0.9079
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10033412 [exp]	15.4	0.9218
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10032509 [exp]	17.9	0.9194
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	19.8	0.9192
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	20.6	0.9185
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10028271 [exp]	21.7	0.9144
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	25.3	0.8993
					Lus10043397 [exp]	26.6	0.9149

Compare expression of checked genes

Lus10020994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.