Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15820 737 / 0 OTP51 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) AT2G17140 86 / 4e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 71 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 70 / 4e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13040 68 / 1e-11 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G22960 67 / 2e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 66 / 8e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15200 65 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 65 / 2e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G19280 64 / 2e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012055 [exp] 872 / 0 AT2G15820 795 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10023856 [exp] 361 / 3e-120 AT2G15820 197 / 3e-58 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10027928 [exp] 254 / 2e-74 AT5G20040 363 / 1e-119 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) Lus10029737 [exp] 71 / 3e-12 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 70 / 5e-12 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10033127 [exp] 69 / 1e-11 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10034149 [exp] 68 / 3e-11 AT5G04810 1157 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043434 [exp] 66 / 1e-10 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10021991 [exp] 65 / 2e-10 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106800 [exp] 828 / 0 AT2G15820 855 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Potri.004G205600 [exp] 79 / 9e-15 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G241300 [exp] 72 / 1e-12 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G249800 [exp] 71 / 2e-12 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G032600 [exp] 67 / 2e-11 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G069100 [exp] 67 / 5e-11 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.001G276500 [exp] 66 / 5e-11 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 65 / 1e-10 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 65 / 1e-10 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G153900 [exp] 64 / 2e-10 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0324 [flax] [poplar] Homing_endonuc PF03161 [flax] [poplar] LAGLIDADG_2 LAGLIDADG DNA endonuclease family CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020996 pacid=23182406 polypeptide=Lus10020996 locus=Lus10020996.g ID=Lus10020996.BGIv1.0 annot-version=v1.0 ATGCAACTCCCTCCCCGATCTCCTTTCTCCTTCCTCCGCTACCTCTCTCGCAGGCGACACCCCTCCTTCCTTCCTTCGCCCCTCCCGGAACCGTCGACTG TAACCCACCACCAGTCTTTGCGCATATTCCACCATTTGAAGTCTTTCAGTCATTCCGTCGAACAGTTGGCGTGCGCATCACATAGTTCGGGATTTTCAAA GATATGGGACCTCTCTAACTCTAATGAGCAGCTGGAAGAAGTTTTGGAATTTGAATGCGGAGATGAGGTTTCGATCAGGGACTTGAAGGAGGACGAGGAG CTGTCGGAGCAAATGAGGAGGGCCAGACTGGAGTGGCTTTGTCAGGAGCTTCCGACGCTTAGGTCCGTGAGTATGGTTCGGTTACTGAATTCCCAGAAGC ATTGGATGACACAGGTTGATTCCGCTTTTGTCGTAGCTCATTGCACAGCAATTTGCGGTAATGAGGCTGCTTTTCAGGTGTATAAGTGGATGGTGCAGCA GCCTTGGTACCATTTCGATTTTGGTTTAGCTTCGAAGGTAGCCGATTACTTGGGCAACGAGAGGAAATTTGTGAAATGTCGAGATATATTCGATGATATA ATCAACCATGGCCGCATCCCTAACGAATCGACATTCCACATTTTGGTGGTTTCTTATCTTGGTGCATCAGTTGAAGGTTGCTTGGACGAAGCATGCGACA TTTACAATCAAATGATTCAGCTCGGAGGCTATAGCCCGAGATTCACCTTGCACAATTCTCTCTTCAGAGCTCTTCTGGCCAAACCTGGAGGATCTTCTTC AAAGACTTATCTTAAACAAGCGGAGATCATTCACCGTAACATGGTGACGAATGGACTTGTAGTGCCGGAGGATTTTTATAACGGGCTAATCTGGCTACAT AGCTATCAGGACGTTGTCGAAAAAGAAAGGATTACGCAATTGCGGAGAGAGATGCGGGAGTTGGGGATAGCTGAAGGTACAGATGTGATGATGTCTATCT TGAGAGCTTGCTCGAAATTAGGTGATGTGGAGGAAGCTGAGAGAATTTGGCTCAAGCTCACCGATTTCGTTGATAGTGGGAGAATCCCTTCTCTTGCTTT TGTATATAGAATGCAAACATTTGCAAAGGTAGGAGAGCCGATGAAGTCTTTGGAAACGTTTAGGCAGATGCAAGAGCTTTTAGGTTCTGCAACTGTTTCC GCCTATCAGAAGATAATTGAGATCTTGTGTGATGCTCAAAATGTGGAACTTGCAGAATTGGTTATGCAAGAACTAGCTCAGGGTGGTTTGAATCCCCTTG CACCGTCTTTTGCGGCTCTAGTGAAGATGTACCTTAACTTAAGCATGCACGAGAGAGTCGAATCGACTTTCTATTTATGCCGAGAGAAATACAGGCCTAA CCGAGCAATTTACAATATTTACCTGAATTCATTGCTGAAAATAGGGAATCTCTCCAAAGCAGAGGAGATATTCAGTCATATGGAGAGCAATGAAGCAAGA ATCGGAGTCGACTCTGCATCGTGTAATGCGATTCTATCCGGTTGGCTCGAGTCGGGAGATCATGTCAAAGCAGAGAAGGTGTACGATTTAATGTGTAAGA AGAAGTTTGATATCGAATCGACATCGATGGAGAAGCTTGAATATGTTCTGAGCCTGAGTAGGGAATGCGTCAAGAGACCGGTTAGCCTCAAGTTAAGTTT CGAGCAACGAGAAGCTTTGGTCGGATTATTGCTGGGCGGTTTGGTGATCGAATCAGATGACACGAGGAAAAATCATCACATGATCCGGTTCGAGCTCGAC GAGAGCTCCAGTATTCATTCCGTCTTGAGACAGCATCTGTACGACGAGTATCGCGAATGGTTGCATCCGTCTTGTAAGCCTAACGATGATGCTAATATAC CTTACAGATTCGCCACGATCTTGGATACTTATTTCGGTTTCTATGCTGACCAGTTTCGGCCAAGAGGCCGGCCAGTGGTTCCGAAGCTGATCAATCGGTG GCTGTCTCCGCGAGCCATGGCGTACTGGTACATGTACGGTGGTCGTAGATCTCAATCAGGGGATATATTGCTGAAACTCGATGTCAATGAAGACCAAGAA AGTGTTGCCAGAGTTGTGAACGTGCTTCGAAACAGGTCGCTCGAATGCAAATTAAAGAGAAAAGATCGAGCTTTCTGGATCGGTTTACTCGGAAACAATG CTACATGGTTTTGGAAACTGGTGGAACCGTATATACTAGATGGGTTAGAGGATCTCCATTCTGCAGAAACTGAAGATATAGTAAGCTTCATCGATGGAGA AGAATCCGAAGAACTCCAGTAG
AA sequence Show only first row Show all	>Lus10020996 pacid=23182406 polypeptide=Lus10020996 locus=Lus10020996.g ID=Lus10020996.BGIv1.0 annot-version=v1.0 MQLPPRSPFSFLRYLSRRRHPSFLPSPLPEPSTVTHHQSLRIFHHLKSFSHSVEQLACASHSSGFSKIWDLSNSNEQLEEVLEFECGDEVSIRDLKEDEE LSEQMRRARLEWLCQELPTLRSVSMVRLLNSQKHWMTQVDSAFVVAHCTAICGNEAAFQVYKWMVQQPWYHFDFGLASKVADYLGNERKFVKCRDIFDDI INHGRIPNESTFHILVVSYLGASVEGCLDEACDIYNQMIQLGGYSPRFTLHNSLFRALLAKPGGSSSKTYLKQAEIIHRNMVTNGLVVPEDFYNGLIWLH SYQDVVEKERITQLRREMRELGIAEGTDVMMSILRACSKLGDVEEAERIWLKLTDFVDSGRIPSLAFVYRMQTFAKVGEPMKSLETFRQMQELLGSATVS AYQKIIEILCDAQNVELAELVMQELAQGGLNPLAPSFAALVKMYLNLSMHERVESTFYLCREKYRPNRAIYNIYLNSLLKIGNLSKAEEIFSHMESNEAR IGVDSASCNAILSGWLESGDHVKAEKVYDLMCKKKFDIESTSMEKLEYVLSLSRECVKRPVSLKLSFEQREALVGLLLGGLVIESDDTRKNHHMIRFELD ESSSIHSVLRQHLYDEYREWLHPSCKPNDDANIPYRFATILDTYFGFYADQFRPRGRPVVPKLINRWLSPRAMAYWYMYGGRRSQSGDILLKLDVNEDQE SVARVVNVLRNRSLECKLKRKDRAFWIGLLGNNATWFWKLVEPYILDGLEDLHSAETEDIVSFIDGEESEELQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	0	1
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	1.7	0.8886
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	2.0	0.8976
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	2.0	0.8907
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10039811 [exp]	3.9	0.8855
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	4.2	0.8690
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	4.2	0.8735
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	5.3	0.8880
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	6.5	0.8713
AT5G35753			Domain of unknown function (DU...		Lus10012334 [exp]	10.0	0.8650
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	11.5	0.8442

Compare expression of checked genes

Lus10020996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.