Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25970 198 / 6e-56 KH domain-containing protein (.1) AT4G10070 129 / 2e-31 KH domain-containing protein (.1) AT1G33680 120 / 1e-28 KH domain-containing protein (.1) AT5G04430 55 / 7e-08 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT1G14170 47 / 3e-05 RNA-binding KH domain-containing protein (.1.2.3) AT1G51580 44 / 0.0002 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023854 [exp] 565 / 0 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10004445 [exp] 174 / 2e-49 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10002947 [exp] 146 / 4e-37 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10003519 [exp] 135 / 2e-33 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10013531 [exp] 134 / 2e-33 AT2G25970 325 / 4e-103 KH domain-containing protein (.1) Lus10017596 [exp] 48 / 1e-05 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 47 / 3e-05 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 46 / 8e-05 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10033557 [exp] 45 / 8e-05 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G055300 [exp] 198 / 1e-55 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 191 / 5e-53 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.013G099800 [exp] 142 / 9e-36 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.019G072500 [exp] 137 / 5e-34 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.010G230500 [exp] 51 / 1e-06 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.008G030700 [exp] 51 / 1e-06 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.004G123400 [exp] 44 / 0.0003 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 44 / 0.0003 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 43 / 0.0004 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 42 / 0.0008 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10020998 pacid=23182427 polypeptide=Lus10020998 locus=Lus10020998.g ID=Lus10020998.BGIv1.0 annot-version=v1.0 ATGGGAGACCACCTTCAGCAGCCGGACGAAGAGCGCAGTGGCGGCGGCGGAAAGAGGAAGCTGGAGAACACAATCGAGCTCGCCAAACAGAAGGCTCAAG AAATCGCCGCTCGTCTAATCAGCGACGCCGCCGCCGACCCCAAGCGCCAGCGCATGGGCGGCTCCGAAGCCTCCTCCGAGCCTTCTCCCTGGTCTGATTC CGCCCCCCCTGCAGCTCCTCCTTCTTACCCCGTTGCTTATAACACTCAATCGAGTCAGTATGGTGTGATGGGAAGTAAAAGGATTGCGATACCGAATGGC AAGGTTGGGGTTGTTATAGGGAAAGGAGGAGAGACGATCAAATACATTCAAATGACATCAGGTGCGAAAATACAAATCACCAAGGATCAGGAAGCTGACC CCCATGCTCGAACGAGGGATGTAGATTTGTCTGGCACTCCAGATCAAATGAGCAGAGCGGAAGAACTTATCAATGAAGTGATTTCAGAGGCAGAAGCAGG GGCTTATTCTTCTTCTGGAGGCCAGGGCTCAAATATGAAGCAATCTGGAGGCGAACAGTTCTCTATGAAAGTTCCAAATGACAGAGTGGGATTGCTCATT GGCAAGGGAGGTGAAACCATCAAGTATATGCAAAACACTTCTGGAGCCAGGGTGCAGATTATTCCCCTACACCTTCCTGCTGGTGATCCGACAACTGAGA GAACTGTATATATAAATGGTTCTGCTGAACAAATTGAGGCAGCCAAAGAATTGATCAATGAAGTAGTTAATGGGAAACGAATAATGAATTCATCCAGAAG CGACTCCTACCAACAACCAGCTTATCAGGCCCCTCCTCCGCCTTACTGGGCTTCAGGAGGACAACAACCTCCAATGCAACAACAAGCGTCATATGGCTAT CAGCAGCAACCGGGTGGACATCCTACTCAACCTTCATACTACGGTAACTACCCAGCTCAACAACCAGCTTGGGACCAGTCAAACCCATCTGGTCAACCAC CGCAACAAGCAGCTGGCTACGGTTACTATGGACAACAACCTCAAATGGGAGCAGCAGCTGCAGTTAATCCCAACTATGGCTATCCGCCTGCACCTGGTGC CAGTACCAACACTTACAATCAAGGTTACGGCCAGCAGCAGCCGCCTTCAAGCTATGGTCAAGGTCAAGCTCCAACACATGACCAGCAAAAACAGTACCCA GGTTCCGGTTATGGTCAAACTCAGAACGAAGGTGCAGCAGCATCCACCCAGACGACAACTCAAGAAGCGTCTGCTGCGTATAATCAGGTTGCTGCTTATA ACAATCCTTACTGGAATTCATCTGGGTACCCTACCCAACCAGCTCAAACTGGTTATGATCAGACCGGTTACGGTTATGGACAGGGTGGGTATGCTGCTCA GCCGGGTTATGGACAGGGTGGATATGCTGGCGATTATGGACAGCAACCTCATCAGGAGACTCAACAGCCCCCAGCAAAGACAGCAACCAATGGCGATTCT GCATCAGCCGGTTATGAAGTCAAGACAAACAACGAGAACACAGGCGATGGTCCGAGCAATGGCGTGAAAGGGGAGCCAGCTCCTTCTGAATCTTGA
AA sequence Show only first row Show all	>Lus10020998 pacid=23182427 polypeptide=Lus10020998 locus=Lus10020998.g ID=Lus10020998.BGIv1.0 annot-version=v1.0 MGDHLQQPDEERSGGGGKRKLENTIELAKQKAQEIAARLISDAAADPKRQRMGGSEASSEPSPWSDSAPPAAPPSYPVAYNTQSSQYGVMGSKRIAIPNG KVGVVIGKGGETIKYIQMTSGAKIQITKDQEADPHARTRDVDLSGTPDQMSRAEELINEVISEAEAGAYSSSGGQGSNMKQSGGEQFSMKVPNDRVGLLI GKGGETIKYMQNTSGARVQIIPLHLPAGDPTTERTVYINGSAEQIEAAKELINEVVNGKRIMNSSRSDSYQQPAYQAPPPPYWASGGQQPPMQQQASYGY QQQPGGHPTQPSYYGNYPAQQPAWDQSNPSGQPPQQAAGYGYYGQQPQMGAAAAVNPNYGYPPAPGASTNTYNQGYGQQQPPSSYGQGQAPTHDQQKQYP GSGYGQTQNEGAAASTQTTTQEASAAYNQVAAYNNPYWNSSGYPTQPAQTGYDQTGYGYGQGGYAAQPGYGQGGYAGDYGQQPHQETQQPPAKTATNGDS ASAGYEVKTNNENTGDGPSNGVKGEPAPSES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25970			KH domain-containing protein (...		Lus10020998 [exp]	0	1
AT1G02870			unknown protein		Lus10002436 [exp]	1.0	0.8925
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10007860 [exp]	1.7	0.8894
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10018144 [exp]	2.0	0.8892
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	6.0	0.8902
AT1G29370			Kinase-related protein of unkn...		Lus10004543 [exp]	11.5	0.8398
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	11.8	0.8405
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10004328 [exp]	15.9	0.8626
AT3G22520			unknown protein		Lus10041202 [exp]	17.6	0.8762
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10012141 [exp]	18.7	0.7987
AT2G40070			unknown protein		Lus10027767 [exp]	19.4	0.8473

Compare expression of checked genes

Lus10020998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.