Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19000 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G19010 419 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G10490 179 / 2e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 179 / 6e-53 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 178 / 1e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10500 176 / 4e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 175 / 2e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 174 / 1e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 172 / 1e-50 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G55290 170 / 1e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023851 [exp] 629 / 0 AT3G19000 474 / 9e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10021002 [exp] 384 / 4e-133 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004245 [exp] 268 / 1e-88 AT3G19010 277 / 2e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10023850 [exp] 236 / 2e-77 AT3G19000 225 / 4e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10042155 [exp] 192 / 1e-59 AT3G19000 219 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 179 / 4e-53 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 177 / 6e-52 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 174 / 2e-51 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030995 [exp] 171 / 8e-50 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G107600 [exp] 491 / 2e-175 AT3G19000 459 / 4e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G107550 [exp] 489 / 1e-174 AT3G19000 452 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146000 [exp] 394 / 4e-137 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146100 [exp] 387 / 5e-134 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G023600 [exp] 182 / 2e-54 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 177 / 1e-52 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 177 / 2e-52 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 177 / 2e-52 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 176 / 4e-52 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 175 / 1e-51 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10020999 pacid=23182352 polypeptide=Lus10020999 locus=Lus10020999.g ID=Lus10020999.BGIv1.0 annot-version=v1.0 ATGGTGGAAATCGATCCATCTTTCATCCAAGAAGCTGACCACAGACCAAACCCAAACCACACAGAAGCGAAACCGACTGCAAATGAAATCCCAGTAGTGG ACCTCTCTTCCCCAGCCGAATCCCTAGTTTCTCAGATTGGGGACGCCTGTGAGAAATGGGGATTCTTTCAGGTGATCAACCATGGAGTCCCTCAGGTGGT CAACCATGGAGTCCCGCTGGAGCTTGTACGCAGCATGAAGAGAGTTGGGAAAGAGTTCTTCGACTTGGCCATGGAAGAGAAGAAGAAAGTGAAGAGGGAT GAAGTTCATCCCATGGGGTATCACGACAGCGAGCACACCAAGAACGTTCGGGACTGGAAGGAAGTCTTCGATTTCTTGGTGGTTGACCCGACTTTGGTTC CGGCTACTGAAGTTGCTGAGGATGTGGAGCTCAGAGAATTGACTAATCAGTGGCCTCAGATACCTGCTGATTTCAGGGAGGTGTGCGAGGAATACAACAG AGAAGTTGAGAAGCTAGCATTCAAGCTTCTTGAACTGATTTCCCTAAGCTTGGGCTTGCCTCCTGATAAACTGAGCAGCTACTTCAAGGACCAAATCAGC TTTTCAAGGTTCAACCACTACCCGCCATGTCCAGCTCCGGAGCTAGCTCTTGGAGTTGGAAGGCACAAGGACGGCGGTGCCTTAACCGTGCTAGCTCAAG ACGACGTTGGAGGGCTGGAAATCGGAGAGAAAAGTTCCGGGGAATGGATCCCTGTCAAGCCTGTTGCTGATGCATTCATCATCAACATTGGCAACTGTAT GCAGGTGTGGAGCAATGACAAGTACTGGAGTGCAGAGCATAGAGTTGTGGTGAACTCCAAAAGGGAAAGGTTTTCAATACCATTCTTCTTCTTCCCTTCA CACTATGTTCAGATCAAGCCAATGGATGAGCTGGTGAACGATGAAAACCCTCCCAAGTACAAGGAGTTCAACTGGGGGAAGTTCTTCACTTCCCGAAACC GCAGTGACTTCGCGAAGCGCGAGGTCGAGAACATCCAAATCGACCATTTCAAGGTGTCGGACTGA
AA sequence Show only first row Show all	>Lus10020999 pacid=23182352 polypeptide=Lus10020999 locus=Lus10020999.g ID=Lus10020999.BGIv1.0 annot-version=v1.0 MVEIDPSFIQEADHRPNPNHTEAKPTANEIPVVDLSSPAESLVSQIGDACEKWGFFQVINHGVPQVVNHGVPLELVRSMKRVGKEFFDLAMEEKKKVKRD EVHPMGYHDSEHTKNVRDWKEVFDFLVVDPTLVPATEVAEDVELRELTNQWPQIPADFREVCEEYNREVEKLAFKLLELISLSLGLPPDKLSSYFKDQIS FSRFNHYPPCPAPELALGVGRHKDGGALTVLAQDDVGGLEIGEKSSGEWIPVKPVADAFIINIGNCMQVWSNDKYWSAEHRVVVNSKRERFSIPFFFFPS HYVQIKPMDELVNDENPPKYKEFNWGKFFTSRNRSDFAKREVENIQIDHFKVSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	0	1
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	3.3	0.9126
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	5.1	0.9032
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	5.7	0.8906
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	9.5	0.8810
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	9.5	0.8757
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10033974 [exp]	10.1	0.8271
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	11.1	0.9002
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	13.3	0.8769
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	14.0	0.8717
AT3G11600			unknown protein		Lus10043404 [exp]	14.4	0.8445

Compare expression of checked genes

Lus10020999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.