Plant FIBer expression Database

Lus10021000 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15860 538 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023852
[exp]
957 / 0 AT2G15860 538 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G107800
[exp]
670 / 0 AT2G15860 562 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10021000 pacid=23182279 polypeptide=Lus10021000 locus=Lus10021000.g ID=Lus10021000.BGIv1.0 annot-version=v1.0
ATGATGGAGGATAAGTCCGATGACAAGACGAAGAACACGCCACCGACAAATGAGGCTATGGAGTCTCGCCAGAAGGAAGAGCCGGAGCAAGAAGTGAAGA
GTGGCGGAGGAGGAGGAGGATGGGGAGGTTGGGGAGGTTTCTCGCCTTTCACTGTCCTTTCAGATCTCCAGAAGGCCGCTGAAGAGATCTCTCGCAATGC
TGCTGAGGCTGCAGAGAAGGCTGCGAAAAGCATTGCTGATATAAACCTCGCTGAGGACTCCGAATCCTCCAAGGGGGAGGATGATCGAGCAGAAGGTGCT
AGTGATAAGGAAACTGATGATGAAAGTGCCGAGTTACGGAAATCTGCTCTGGATAAGTTGGGAAATGCTGGTGAAGATTCCATACTTGGCCAGGGGCTTA
AAGTTCTGGATCACTCTGTGGAGAATTTCGCTACAGGAGCTTGGCAAGCATTAGGAAATGCATGGAAAGGTGGTTCTGGTTTCGTCCAGAGGCTAGAAAA
TTCTGCTGTGGACCTTGCAGAAACAATTCAAAAGGATGGCATACAGGGTGCAGCTGGTTCGGTTGCACCATTACTAGAGTCTGGAAAAGCCTTCACAACA
AAAGGAATGCAAGTACTTGAATATGTTGGCAAGGAGACCATGGATCTCCTAATTGCAGAGAGCGGTATGGATGTTGACAAGAATTCCAAATCCTCCGGAA
AAGAAGGTGATGAGGATCAGTCACTTGAGGATGTCACCTTCGATCGATGCTTCTATATATATGGAGGTCCAGAGCAATTGGAGGAGTTGGAGTCATTGGC
AAACCATTACGCTCTCTTGTTCAATCGAAGGAAAGTGAAACTGTCATCAGAACAGAAGTCTGTGTATGATGGAAAGCTCAAAACGGTTCAGCAAATTTTC
GATCTCGACATTGAAATGGATGGAAATGGCACAGAGTCGAACAAAGGGAAAAACGTGGAGGCTGAAACCAAGGGAGGTAGCGATGAGATAAAATCTTTGC
ATGATGCGAGTGTCAGCAAAGCTGCTGATATGGCTGCAGGGTTTACAAGTGCGCTAGCTGGACAAACCGTGAATGACATGGTTCAAAGAACTTCTGGCAG
ACTAGAAACACTTCATTCAGAGGGGATCCATAGACTCTCCGAGATGGCTTGTGCTGCCGTTTCTCAGCTTCTGATGCTTGGTAAATCCATCATATCCCAT
ACTAACAAAACCACCCAAGAAGATGCTGCTGATGCTGCAGTCAACATCATCTGGCCCGATGATTCTGTTGAGAGAGCAAAGCTGATTAGGAAACAGGCGC
AGACAATGGCGCGATACACCGAAGCTGTTTCCAAAAGCTTTATAACAGGCATATCCGATGTTGCTGAAGCATACCTAGCAGCCATAAAGGGAGCCACTAC
TGCAGACAGCAGCAGCGAAGACCGTCCGAAGAAATCGATCCAAGAGAAAGCCAATACTTTCACCGAACTCCTCCGAGCAGATCAAACCGCAGCAGTAGGG
AAAATCCAGGACGGGCTCCAATACTTGACTTATGTGGTCATTTCCACTTCCATGCCTGCCCCTTGA
AA sequence
>Lus10021000 pacid=23182279 polypeptide=Lus10021000 locus=Lus10021000.g ID=Lus10021000.BGIv1.0 annot-version=v1.0
MMEDKSDDKTKNTPPTNEAMESRQKEEPEQEVKSGGGGGGWGGWGGFSPFTVLSDLQKAAEEISRNAAEAAEKAAKSIADINLAEDSESSKGEDDRAEGA
SDKETDDESAELRKSALDKLGNAGEDSILGQGLKVLDHSVENFATGAWQALGNAWKGGSGFVQRLENSAVDLAETIQKDGIQGAAGSVAPLLESGKAFTT
KGMQVLEYVGKETMDLLIAESGMDVDKNSKSSGKEGDEDQSLEDVTFDRCFYIYGGPEQLEELESLANHYALLFNRRKVKLSSEQKSVYDGKLKTVQQIF
DLDIEMDGNGTESNKGKNVEAETKGGSDEIKSLHDASVSKAADMAAGFTSALAGQTVNDMVQRTSGRLETLHSEGIHRLSEMACAAVSQLLMLGKSIISH
TNKTTQEDAADAAVNIIWPDDSVERAKLIRKQAQTMARYTEAVSKSFITGISDVAEAYLAAIKGATTADSSSEDRPKKSIQEKANTFTELLRADQTAAVG
KIQDGLQYLTYVVISTSMPAP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15860 unknown protein Lus10021000
[exp]
0 1
AT5G46860 SGR3, ATVAM3, A... SHOOT GRAVITROPISM 3, ARABIDOP... Lus10040094
[exp]
1.0 0.8731
AT2G15860 unknown protein Lus10023852
[exp]
1.4 0.8537
AT2G38020 EMB258, MAN, VC... VACUOLELESS 1, MANGLED, vacuol... Lus10012203
[exp]
4.0 0.8177
AT3G60600 (AT)VAP, (AT)VA... VAMP/SYNAPTOBREVIN-ASSOCIATED ... Lus10028937
[exp]
4.6 0.8458
AT2G40810 ATATG18C homolog of yeast autophagy 18C... Lus10001580
[exp]
7.5 0.7998
AT3G19980 STPP, ATFYPP3, ... SERINE/THREONINE PROTEIN PHOSP... Lus10013456
[exp]
9.9 0.7969
AT2G30395 OFP ATOFP17, OFP17 ovate family protein 17 (.1) Lus10024191
[exp]
10.2 0.7883
AT1G56230 Protein of unknown function (D... Lus10029871
[exp]
11.2 0.8005
AT1G22170 Phosphoglycerate mutase family... Lus10033465
[exp]
12.0 0.8026
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Lus10027924
[exp]
16.4 0.7846

Lus10021000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.