Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19020 466 / 8e-153 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 458 / 9e-153 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 447 / 7e-149 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 448 / 3e-147 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 395 / 3e-131 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 393 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 385 / 4e-124 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT1G62440 380 / 2e-121 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 373 / 1e-119 LRX1 leucine-rich repeat/extensin 1 (.1) AT4G28380 340 / 2e-111 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012047 [exp] 608 / 0 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 599 / 0 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 381 / 1e-122 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 362 / 1e-119 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 341 / 3e-109 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10039362 [exp] 330 / 2e-107 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 332 / 3e-107 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 302 / 4e-94 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 294 / 3e-93 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146350 [exp] 490 / 1e-163 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 474 / 4e-154 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 437 / 2e-146 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 397 / 2e-127 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G075900 [exp] 390 / 6e-127 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 387 / 6e-127 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 382 / 1e-125 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.007G139200 [exp] 368 / 1e-121 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 347 / 9e-112 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 325 / 4e-105 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021001 pacid=23182433 polypeptide=Lus10021001 locus=Lus10021001.g ID=Lus10021001.BGIv1.0 annot-version=v1.0 ATGGCTAATATAACACCCTCCCCATCCCATGCAACACAATGCTATAAGCAAAGCCTTGGGCAGTCCAAGGTTGGGTTTTTAGACATGGCTCCACCTCCTA ACTCCTTGGGCTGCCTTCTCTTAATCACCATCATCTCCCTCATCTCTTCTTCCTCAACCTTCTCGAATGCATTGACGGACTCTGAAGTCTCCTATATCGC TCATCGCCAGCTCCTCACGTTCAAGGAGTTGGAACATACGGGAATAAACACTGATGTGGACCCCAATCTCAAGTTCGAGAACGAGAGGTTGAGGAATGCC TACATAGCCTTACAGGCGTGGAAGGAGGGCATCCACTCGGACCCTACGAAGGTCACAGCGACGTGGGTCGGGGCCGACGTGTGTTCGTACACGGGAGTGT TCTGCGCCGAGGCGCTCGATGGCTCGAAGATGAATGTCGTGGCGGGGATCGACCTCAACCATGCAGATATCGCTGGATACTTCCCCACCGAGTTGGGTTT GCTCACTGATTTGGCCATGCTGCATCTCAACTCGAATCGGTTTTGCGGGATCATCCCAATGTCGTTTTGCAACATGACGATAATGTACGAGTTTGACGTC AGCAATAATCGGCTGGTGGGGCCTTTCCCCCAGGCTGTGTTATGCTGGAAGGAAGCCAAGTTCGTTGACCTGAGGTTCAACAACTTTGAAGGCAGTTTAC CGCCAGAGATCTTTGTGAAAGGGCTCGACGCGTTGTTCTTGAACAACAACCGGTTCACGTCTTCCATTCCCGAGACTCTCGGAAACTCCACCGTAAGTGT AATCGTGTTGGCATTTAACAACTTGACCGGGTGTATCCCACATAGCATTGGGATGATGCCTAGAGTGGAGGAGATCATCTTTGCTGGGAACAACCTCGGC GGATGCTTCCCGCCTGAGATCGGGAACCTTAGGAACGTGACGGTTTTTGATGTCAGCAACAGCGGGTTTGTGGGTTCCATTCCGTTGAGCTTTTCCGGGC TGAAGAGCATTGAGTCATTAGATATCTCAAGTAACAAAATGACCGGATTTGTGCCAGACGAGATATGCAAGCTGCCGGCTATGACAAATTTTACATTCGC TTCCAATTACTTCAACAGTGTTTCCCCTAATTGTAACCCGCAGAAGAGGAAAGATGTCACATTAGAGGATCACAATAACTGTTTGCCCGGCCGGCCAGAA CAGAGGTCTGATAATGTTTGCAATCCTGTAGTGAAAAATCCAGTAGACTGCAGCAAAGACCGATGCGGTGGCGGAGGCAAAGCACCACCAAAGCCGACAC CAAAAGAGGATGACCCACATTTGCCTGCTAGTGGCGGAATGGGGCGCGCTCCACCACTATCCGTGCCGACACAATCTCCCCCTCCACCGATGCCAGTCCA TTCTCCTCCTCCACTGCCACCGGCACCAATCCATTCACCACCACCTCCGGCACCGGTTCACTCACCACCGCCACCAGTCCATTCACCACCACCTCCGACA CCGGTTCACTCACCGCCTCCACCGGTAACACCGCCCACACCAAACGAAGAAGACCCACATTTGCTTGCTAGTGGCGGAATGGGGCGCCCTCCACCACCAT CACCAGTGCCGACAAAATCTCCCCCTCCACCGGCGCCAGTCCATTCTCCTCCTCCTCCAGCACCAGTTCATTCTCCACCACCTCCGGCACCGGTTCACTC ACCGCCTCCAGCGACATTCTCCCCACCACCACCGCCGGTCCATTCTCCACCGCCGCCAGTTCTATCCCCACCACCTCCCGCTCCGGTACATTCTCCACCA CCACCCGTACATTCCCCTCCTCCGCCGGTAGTCCAACACCCACCGCCAAAGCCACGACCCGCTTCTTCAGCACCGCCGCCAAAACAAGACTTCGTCCTCC CGCCAAACTTAGGATTCCAATATCATTCCCCTCCGCCGCCGATGTTCCCAGGCTACTAA
AA sequence Show only first row Show all	>Lus10021001 pacid=23182433 polypeptide=Lus10021001 locus=Lus10021001.g ID=Lus10021001.BGIv1.0 annot-version=v1.0 MANITPSPSHATQCYKQSLGQSKVGFLDMAPPPNSLGCLLLITIISLISSSSTFSNALTDSEVSYIAHRQLLTFKELEHTGINTDVDPNLKFENERLRNA YIALQAWKEGIHSDPTKVTATWVGADVCSYTGVFCAEALDGSKMNVVAGIDLNHADIAGYFPTELGLLTDLAMLHLNSNRFCGIIPMSFCNMTIMYEFDV SNNRLVGPFPQAVLCWKEAKFVDLRFNNFEGSLPPEIFVKGLDALFLNNNRFTSSIPETLGNSTVSVIVLAFNNLTGCIPHSIGMMPRVEEIIFAGNNLG GCFPPEIGNLRNVTVFDVSNSGFVGSIPLSFSGLKSIESLDISSNKMTGFVPDEICKLPAMTNFTFASNYFNSVSPNCNPQKRKDVTLEDHNNCLPGRPE QRSDNVCNPVVKNPVDCSKDRCGGGGKAPPKPTPKEDDPHLPASGGMGRAPPLSVPTQSPPPPMPVHSPPPLPPAPIHSPPPPAPVHSPPPPVHSPPPPT PVHSPPPPVTPPTPNEEDPHLLASGGMGRPPPPSPVPTKSPPPPAPVHSPPPPAPVHSPPPPAPVHSPPPATFSPPPPPVHSPPPPVLSPPPPAPVHSPP PPVHSPPPPVVQHPPPKPRPASSAPPPKQDFVLPPNLGFQYHSPPPPMFPGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10021001 [exp]	0	1
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	42.0	0.7805
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10003553 [exp]	50.9	0.8282
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10006347 [exp]	53.4	0.8103
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	75.3	0.8093
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	76.2	0.8015
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	94.1	0.8047
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	114.6	0.7699
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10004037 [exp]	135.6	0.7703
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	138.8	0.7612
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	173.3	0.7859

Compare expression of checked genes

Lus10021001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.