Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19000 369 / 3e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G19010 365 / 5e-126 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G55970 199 / 8e-61 ATJRG21 jasmonate-regulated gene 21 (.1) AT5G05600 199 / 1e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 191 / 1e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 188 / 9e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 189 / 2e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 184 / 4e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 180 / 2e-53 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 173 / 5e-51 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023850 [exp] 387 / 9e-137 AT3G19000 225 / 4e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10023851 [exp] 376 / 4e-130 AT3G19000 474 / 9e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10020999 [exp] 370 / 1e-127 AT3G19000 473 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004245 [exp] 246 / 3e-80 AT3G19010 277 / 2e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10030995 [exp] 192 / 3e-58 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030934 [exp] 187 / 4e-56 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10040112 [exp] 186 / 8e-56 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10042155 [exp] 180 / 3e-55 AT3G19000 219 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 184 / 7e-55 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146000 [exp] 484 / 2e-172 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146100 [exp] 472 / 1e-167 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G107600 [exp] 399 / 3e-139 AT3G19000 459 / 4e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G107550 [exp] 395 / 8e-138 AT3G19000 452 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G069300 [exp] 197 / 3e-60 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 194 / 4e-59 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 192 / 3e-58 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 190 / 3e-57 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 189 / 7e-57 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 187 / 5e-56 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10021002 pacid=23182369 polypeptide=Lus10021002 locus=Lus10021002.g ID=Lus10021002.BGIv1.0 annot-version=v1.0 ATGGGAGAAGTTGATGCAGCATTCATCCAAGAAGCAGAGCACAGACCAAACCCAGAAATCATCAAAGCAGAAGGAATTCCTCTCATCGACCTCTCTCATG CATCAACCGAGAGACTTGTGGGGGAGATCAGGGATGCTTGCAGGGAATGGGGGTTCTTCCAAGTGATCAACCATGGAGTTCCATTGGAGGCCAGACAGAG AGTGGAGGCTGCTTCGAAGGAGTTCTTCTGGCAGCCATTGGAGGAGAAGAGGAAAGTTAGAAGAGATGAGAAGAAAGTTATGGGTTACTATGACACTGAG CATACCAAGAACGTTAGGGATTGGAAAGAAGTGTTTGATTTCAGTGTTGAAGATCCTACTTTTGTTCCTCATGATGATCATGGTGGTGGTTTCTCTGAGT GGCATAATCAGTGGCCTCAACATCCCTCTGATCTCAGGGAAGCATGCGAGGAGTATGCAAAAGAAGTGGAGAAGCTAGCCTACAAGGTGATGGAGCTGAT CGCCATGAGCCTAGGGCTGGAACCAGACAGATTCCATGGATTCTTCGACGACCAATCGACCAGCTTCGTGAGGCTGAATCACTATCCTCCATGCCCAGTT CCTCACTTGGCCCTCGGAGTCGGCCGGCACAAGGACGCCGGAGCACTCACCGTTCTTGCTCAGGACGACGTCGGCGGGCTGGAAGTGAAGAGGAGGTCCG ATGGGGAGTGGGCCTGGGTCCAGCCCACTCCTGATGCTTACATTGTCAACGTTGGTGACATCATCCAGGTTTGGAGCAATGAGGCATACGAGAGCGTGGA ACACAGAGTGATGGTGAACTCAGAGAAGGAAAGGTTCTCGATTCCGTTCTTCTTCAACCCATCCCATTACACTGTGGTTCAGCCATTGGAGGAACTACTG GTGGTGGATGCTAGTAAGAAGAAGAAGAACACTACAGCAAAGTACAGGCCTTACCACTGGGGGAAGTTCTTTGTTACCAGGAAAGGCAGCAACTTCAAGA AACTTGCTGTTGAAAACATCCAGATCTCTCACTTCAGAGTCCTCTCAGAAATCTGA
AA sequence Show only first row Show all	>Lus10021002 pacid=23182369 polypeptide=Lus10021002 locus=Lus10021002.g ID=Lus10021002.BGIv1.0 annot-version=v1.0 MGEVDAAFIQEAEHRPNPEIIKAEGIPLIDLSHASTERLVGEIRDACREWGFFQVINHGVPLEARQRVEAASKEFFWQPLEEKRKVRRDEKKVMGYYDTE HTKNVRDWKEVFDFSVEDPTFVPHDDHGGGFSEWHNQWPQHPSDLREACEEYAKEVEKLAYKVMELIAMSLGLEPDRFHGFFDDQSTSFVRLNHYPPCPV PHLALGVGRHKDAGALTVLAQDDVGGLEVKRRSDGEWAWVQPTPDAYIVNVGDIIQVWSNEAYESVEHRVMVNSEKERFSIPFFFNPSHYTVVQPLEELL VVDASKKKKNTTAKYRPYHWGKFFVTRKGSNFKKLAVENIQISHFRVLSEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10021002 [exp]	0	1
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Lus10009574 [exp]	6.7	0.9301
AT5G04590		SIR	sulfite reductase (.1)		Lus10009951 [exp]	8.4	0.8867
AT1G13090		CYP71B28	"cytochrome P450, family 71, s...		Lus10002670 [exp]	28.1	0.8945
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10029552 [exp]	30.0	0.8858
					Lus10015147 [exp]	34.7	0.8435
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10002324 [exp]	39.9	0.8883
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10013282 [exp]	53.8	0.8464
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10029826 [exp]	54.3	0.8539
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Lus10006629 [exp]	62.9	0.8522
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	73.7	0.8496

Compare expression of checked genes

Lus10021002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.