Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79620 517 / 4e-175 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 424 / 3e-139 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 400 / 4e-130 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 392 / 6e-128 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 312 / 9e-97 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 300 / 5e-92 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 295 / 1e-90 Leucine-rich repeat protein kinase family protein (.1) AT1G70460 278 / 8e-86 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G24550 272 / 3e-84 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G53590 275 / 4e-84 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023848 [exp] 665 / 0 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 468 / 2e-155 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 356 / 1e-113 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 317 / 2e-98 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 317 / 3e-98 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 311 / 3e-96 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 308 / 8e-95 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 293 / 1e-89 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013014 [exp] 275 / 1e-87 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G144100 [exp] 566 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 556 / 0 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 460 / 5e-153 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 456 / 1e-151 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 452 / 8e-151 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G046450 [exp] 428 / 1e-141 AT5G49760 865 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 418 / 4e-137 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 402 / 5e-131 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 397 / 4e-129 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 396 / 4e-129 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021003 pacid=23182438 polypeptide=Lus10021003 locus=Lus10021003.g ID=Lus10021003.BGIv1.0 annot-version=v1.0 ATGGAGGGATTGCTTACTTTCGTTATGTTCTTCAGTGTAACAGTTCATGTCAGCTTATCTGCCACAGACCCTCGTGACGGGACACATGGAGGAGCTTCCA TCAGCAGAGGCGTTATAGCTGGGATAGCAAGTGGTTGTGCAGTCCTGGTTCTGTGCTTAGTTGGTGTAGCCATTTATGCCATTTGGCAGAAGAAACGTGC AGAAAAGGCCATTGTGTTTAGTAAACCTTTTGCTTCTTGGGCGGCAGCAAGCCGAAAGGATCACAGTGGTGGGTCAGGAGCGCCGCAGTTGAAGGGAGCG AGATGGTTCTCCTATGATGAACTCAAGAAGTGCACTAGTAACTTCTCAGGGAGCAATGAGATAGGTTCTGGAGGATATGGAAAGGTGTACAGAGGAATGC TTTCGGATGGACAGCTAGTGGCAATCAAACGAGCACGACAAGGATCACTGCAAGGTGGGCAGGAGTTCAAGACTGAAATCGAGCTGCTATCAAGAGTACA CCACAAGAATCTCTTAGCCCTCATTGGCTTCTGTTTCGAACAAGGAGAACAGATGCTGGTGTACGAGTTCATGCCCAATGGAAGTCTCAAGGAAAGTTTG ACAGGTAAATCAGGTATTCATCTTGACTGGAGAAGGAGGCTCCGGATCGCCCTTGGATCGGCTAGAGGACTCGCGTACCTTCACGAGCTTGCAAACCCTC CAATCATCCACAGAGACATCAAGTCCACCAATATCCTCTTGGATGAAAACTTGAGTGCCAAGGTTGCTGATTTTGGCCTGTCCAAGCTTGTCTCCGATAG CACAAAAGGCCATGTTTCTACTCAAGTTAAAGGCACCTTGGGATACCTGGATCCAGAATACTACATGTCACAGCAGCTGACGGAGAAGAGCGACGTCTAC AGTTTCGGAGTTGTGGTGCTGGAACTGGTGACAGCGAAGCAGCCGATCGAGAAAGGTAAGTACATAGTCCGCCAAGTGCGGATGAAGATGATTCCGGAAG CTAATGCGGAGGCGGAGGAAGAGGATCAGTACTACTGCGGGCTGAAGGAAATGATCGATCCGAAGATCGTCGCGGAGGTTGCGACGGCAGGCACGACTCT CCGGCGGGTCCTCGACCTGGCAATGCAGTGCGTAGAAGAATCGGCAGGTGACCGGCCGACAATGAGCCAGGTGGTGAAGACGATCGAGGCGATTCTGCAG GAGGAAGGCGTTAACGGTAACTCCACCTCCGCTTCCTCGTCGGCGACAGACTTCGGTATCCATTGCCTGAGAGGAGGAGGAGGCGGTACTCTGAAGCATC CATACTGCGGCTCCGGCGATGTGTGTGGTGCTACTAATAATACAAAAGGAAGCGGAGGGAAGGTTAACGGTAACGAGCAGTGCGATGCGTTCGATTACAG TGGTGGCTATGGGGTTTCGACCACGGGGGAGCCTAAGTAG
AA sequence Show only first row Show all	>Lus10021003 pacid=23182438 polypeptide=Lus10021003 locus=Lus10021003.g ID=Lus10021003.BGIv1.0 annot-version=v1.0 MEGLLTFVMFFSVTVHVSLSATDPRDGTHGGASISRGVIAGIASGCAVLVLCLVGVAIYAIWQKKRAEKAIVFSKPFASWAAASRKDHSGGSGAPQLKGA RWFSYDELKKCTSNFSGSNEIGSGGYGKVYRGMLSDGQLVAIKRARQGSLQGGQEFKTEIELLSRVHHKNLLALIGFCFEQGEQMLVYEFMPNGSLKESL TGKSGIHLDWRRRLRIALGSARGLAYLHELANPPIIHRDIKSTNILLDENLSAKVADFGLSKLVSDSTKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVY SFGVVVLELVTAKQPIEKGKYIVRQVRMKMIPEANAEAEEEDQYYCGLKEMIDPKIVAEVATAGTTLRRVLDLAMQCVEESAGDRPTMSQVVKTIEAILQ EEGVNGNSTSASSSATDFGIHCLRGGGGGTLKHPYCGSGDVCGATNNTKGSGGKVNGNEQCDAFDYSGGYGVSTTGEPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	0	1
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	1.4	0.9873
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034624 [exp]	2.0	0.9857
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	2.2	0.9827
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031281 [exp]	2.4	0.9856
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	2.8	0.9847
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	3.7	0.9775
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10039610 [exp]	5.2	0.9749
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	6.9	0.9778
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	6.9	0.9716
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	7.5	0.9751

Compare expression of checked genes

Lus10021003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.