Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23530 108 / 2e-28 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT4G37110 107 / 2e-28 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G67780 72 / 1e-15 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT5G38690 69 / 2e-14 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67270 69 / 3e-14 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G11950 41 / 9e-05 Transcription factor jumonji (jmjC) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023846 [exp] 188 / 2e-60 AT2G23530 272 / 2e-87 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10019647 [exp] 102 / 2e-26 AT2G23530 301 / 5e-97 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10000845 [exp] 101 / 5e-26 AT2G23530 303 / 8e-98 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10033539 [exp] 66 / 5e-13 AT5G38690 405 / 2e-134 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10017575 [exp] 65 / 6e-13 AT5G38690 409 / 8e-137 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108400 [exp] 121 / 8e-34 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.007G036200 [exp] 108 / 3e-28 AT2G23530 320 / 6e-102 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.006G257400 [exp] 66 / 3e-13 AT5G38690 270 / 2e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.018G024400 [exp] 59 / 7e-11 AT5G38690 271 / 1e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.012G044400 [exp] 56 / 6e-10 AT4G37110 96 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10497 [flax] [poplar] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Lus10021004 pacid=23182361 polypeptide=Lus10021004 locus=Lus10021004.g ID=Lus10021004.BGIv1.0 annot-version=v1.0 ATGGTGTCGGCGACGAGGCGACGAAGAGCCGGAATCGGCGCTGCCACCGCCGGAGAAGAAGCAGTCGGTTCGAGTCCGGATCAACCTCCAGCATACGGAG AGAATGTGGCCGAAGTGAACAAGAATCCAGATTGGATTTGCCCGACTTGCCGGGGAATCTGTAATTGCAGTCTTTGCAGGAAAGGAAAAGGTTGGTTACC TACGGGCAATCTTTATAGGAAGGTTACTAAGCTCGGCTTCAAGTCCGTGGCACATTTTCTCATCCAAACCTGCCGTGCTAAGTCTACCCCAGAAGACTCA CCTGCACCTGCTGAAGATCTCGTCCCTAAACTTCTCGATGCATCTGGTGAAGATGGTGAAGTCGGTACAGGAGACGGAGATGTCTCAATTGGCGATCATG CTGCTGTTGACGAAGTGAAATAA
AA sequence Show only first row Show all	>Lus10021004 pacid=23182361 polypeptide=Lus10021004 locus=Lus10021004.g ID=Lus10021004.BGIv1.0 annot-version=v1.0 MVSATRRRRAGIGAATAGEEAVGSSPDQPPAYGENVAEVNKNPDWICPTCRGICNCSLCRKGKGWLPTGNLYRKVTKLGFKSVAHFLIQTCRAKSTPEDS PAPAEDLVPKLLDASGEDGEVGTGDGDVSIGDHAAVDEVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37110			Zinc-finger domain of monoamin...		Lus10021004 [exp]	0	1
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	1.0	0.8180
AT4G02160			unknown protein		Lus10010018 [exp]	3.7	0.7912
AT5G58820			Subtilisin-like serine endopep...		Lus10002245 [exp]	3.7	0.7453
AT4G26830			O-Glycosyl hydrolases family 1...		Lus10011852 [exp]	8.4	0.7103
					Lus10015336 [exp]	10.1	0.7864
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	10.1	0.7623
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10037513 [exp]	11.5	0.6589
					Lus10027076 [exp]	14.0	0.7704
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	15.0	0.7760
					Lus10024012 [exp]	16.2	0.7288

Compare expression of checked genes

Lus10021004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.