Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44150 274 / 1e-93 unknown protein AT2G15910 264 / 3e-88 CSL zinc finger domain-containing protein (.1.2) AT3G11800 253 / 1e-85 unknown protein AT3G48630 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023845 [exp] 440 / 2e-159 AT3G44150 276 / 3e-94 unknown protein Lus10029366 [exp] 264 / 1e-89 AT3G44150 328 / 1e-114 unknown protein Lus10016181 [exp] 263 / 3e-89 AT3G44150 328 / 2e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146800 [exp] 293 / 4e-101 AT3G11800 271 / 5e-92 unknown protein Potri.016G068000 [exp] 278 / 2e-95 AT3G44150 342 / 4e-120 unknown protein Potri.006G201600 [exp] 274 / 8e-94 AT3G44150 330 / 2e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021005 pacid=23182448 polypeptide=Lus10021005 locus=Lus10021005.g ID=Lus10021005.BGIv1.0 annot-version=v1.0 ATGGCGAATGCAGCCGACGACAGCAACCCAGTGTTCGATCCATGCTCCGATACCACAGTGGCGAAATCAGACGGGTTCACTTTTGGCCTAGCGTTTTCAA GCAACGTTTCCTTCTTCACGGGGGAGGTCCAGCTCTCCCCATGCGACAAACGCCTTGCCTTGGCATCCAAGCATTCCCAGCTTGCAGTGTTTAGGCCGCA GGTCGACGAGCTCTCGCTCCTCACCATCAGCAGCGACACGTTCGATCCGGCCAAGGCAGGCGGGTGCATGGTAGCTTTTGCTGGAAGGAACTTTGCAGCA AGGTCAATGCCGACTCTGGTGACTGATGGTACTATGAGCATCACTAGCTTCACATTGGTTCTTGAGTTCCAGAAGGGTACCCTGGAAAACTTGTATTGGA AGAAATTCGGGTGCGAGTCATGCCATGGCGAGTTTCGTTGCTTGAATGAGCAGGACTGTGCGATACCGAGAGCCAAATGTAGGAGCCACGGAGGGGCCTA CGACTGCGATCTGAACATACAGCTGGCATTCTCAGGTACTGATAAGAACCTGGAGACTCTCAACTCCTGGTACGAAGTTTCCAGTCTCCAGCAGTACTCG CTCTACGGCCTGTACTCGAATGTAAAGGACAATCTCTTCATGTAA
AA sequence Show only first row Show all	>Lus10021005 pacid=23182448 polypeptide=Lus10021005 locus=Lus10021005.g ID=Lus10021005.BGIv1.0 annot-version=v1.0 MANAADDSNPVFDPCSDTTVAKSDGFTFGLAFSSNVSFFTGEVQLSPCDKRLALASKHSQLAVFRPQVDELSLLTISSDTFDPAKAGGCMVAFAGRNFAA RSMPTLVTDGTMSITSFTLVLEFQKGTLENLYWKKFGCESCHGEFRCLNEQDCAIPRAKCRSHGGAYDCDLNIQLAFSGTDKNLETLNSWYEVSSLQQYS LYGLYSNVKDNLFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44150			unknown protein		Lus10021005 [exp]	0	1
AT4G22410			Ubiquitin C-terminal hydrolase...		Lus10035548 [exp]	1.0	0.9850
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	3.2	0.9835
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	3.9	0.9835
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	4.5	0.9835
					Lus10033096 [exp]	5.0	0.9835
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	5.5	0.9759
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028741 [exp]	5.7	0.8658
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10006779 [exp]	6.9	0.9625
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	7.0	0.9647
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004438 [exp]	7.3	0.9552

Compare expression of checked genes

Lus10021005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.