Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49480 140 / 1e-42 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 137 / 2e-40 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G33280 42 / 3e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G17010 40 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 40 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 39 / 0.0003 B3 VDD VERDANDI (.1) AT2G24650 39 / 0.0006 B3 REM13 DNA binding;DNA binding;sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012041 [exp] 169 / 2e-52 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027940 [exp] 169 / 2e-52 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 74 / 5e-17 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10000746 [exp] 53 / 1e-09 AT3G18990 56 / 8e-10 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10037323 [exp] 53 / 5e-09 AT3G18990 79 / 2e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10000368 [exp] 51 / 3e-08 AT5G63900 84 / 3e-17 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016777 [exp] 51 / 3e-08 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025388 [exp] 49 / 2e-07 AT4G33280 70 / 8e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10026264 [exp] 49 / 2e-07 AT2G24700 174 / 2e-48 Transcriptional factor B3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146900 [exp] 159 / 2e-48 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 156 / 2e-47 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 117 / 2e-32 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 90 / 3e-22 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.010G191500 [exp] 82 / 2e-19 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 66 / 2e-13 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 46 / 1e-06 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 44 / 8e-06 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 42 / 4e-05 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 41 / 8e-05 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10021006 pacid=23182374 polypeptide=Lus10021006 locus=Lus10021006.g ID=Lus10021006.BGIv1.0 annot-version=v1.0 ATGCCTGCTAGGCCTTACTTCCACAAAATCATCCTCCCCAGAACCCTCCATGACAGGAAGCTGTATTTACCATCCTGCTTCGCGGAGAAGAATCTCAACG GCGTTTCCGGATTCATCAAGCTGCAGTACACCGACGGGAAGCAGTGGCCCGTCCGGTGCCTTTACAGAGGCGGGAGAGCGAAGCTGAGCCAAGGATGGTT CGAGTTCACGTTGGAGAACAATATCGGAGAAGGAGATGTTTGTGTGTTTGAGCTGATGAAATCGAGGGATGTTGTGCTTAAACTGACCGTCTTTCGCGTC ATGGATGAGAACGGCGGTGGTGGTGGTGGCTACGTAAACCACCACCAGCATTACGACGCTGTTCTGCAGCCCCCGACGCAACATTAG
AA sequence Show only first row Show all	>Lus10021006 pacid=23182374 polypeptide=Lus10021006 locus=Lus10021006.g ID=Lus10021006.BGIv1.0 annot-version=v1.0 MPARPYFHKIILPRTLHDRKLYLPSCFAEKNLNGVSGFIKLQYTDGKQWPVRCLYRGGRAKLSQGWFEFTLENNIGEGDVCVFELMKSRDVVLKLTVFRV MDENGGGGGGYVNHHQHYDAVLQPPTQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10021006 [exp]	0	1
AT5G27870			Plant invertase/pectin methyle...		Lus10020313 [exp]	6.0	0.7721
AT1G78810			unknown protein		Lus10028833 [exp]	12.2	0.6830
AT5G43490			unknown protein		Lus10002352 [exp]	26.4	0.7577
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10003862 [exp]	30.5	0.7268
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	31.0	0.7547
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	57.6	0.6907
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10022656 [exp]	58.5	0.6763
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	61.8	0.7463
AT5G51170			unknown protein		Lus10031950 [exp]	62.8	0.7429
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028013 [exp]	75.3	0.6960

Compare expression of checked genes

Lus10021006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.