Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 87 / 2e-19 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 67 / 7e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 65 / 3e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 52 / 6e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 49 / 1e-06 B3 REM16 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023843 [exp] 369 / 2e-127 AT3G18990 81 / 9e-17 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032159 [exp] 259 / 3e-84 AT3G18990 93 / 8e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014528 [exp] 243 / 1e-77 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 89 / 4e-21 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10019977 [exp] 86 / 3e-20 AT3G18990 41 / 7e-05 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 85 / 1e-19 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 86 / 4e-19 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 81 / 1e-17 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 83 / 2e-17 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 98 / 4e-23 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 79 / 4e-17 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 80 / 1e-16 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 79 / 2e-16 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G230100 [exp] 77 / 1e-15 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 77 / 1e-15 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 76 / 3e-15 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 66 / 2e-12 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 52 / 2e-07 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 47 / 1e-05 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10021007 pacid=23182293 polypeptide=Lus10021007 locus=Lus10021007.g ID=Lus10021007.BGIv1.0 annot-version=v1.0 ATGGCTGTCAACAACCTTTCCAAGATTTTCTGGCAGATTATCTATCCTGGAGACCTCGAGGAGGGAAGATTGAGGATTTCGGAGGACTTCGTGATGAAGT GCGGCCACCTGCTCTCCGGTGAGGCGGTGCTGAAAGTACCGGACGGAAAAGTTTGGAAGATCGGTCTGGCAAAGCAATACTTCCGCCGAGAAGAGAGAAT CTGGCTCAGTGCTGGATCCCGACGTTTCATCGAGTACTACTCCATTGGCGTCGGTTCCCTTCTGATATTCGAGTTCCGAGGATCATCCAGATTCCAGGTT TCCATTTTCGACCTCACCGCCTGTGAGATCGTCTACCCTGTCTCCTCCGGCAACCCAGATTCCAGTTCAGATTCTGATTTCGACTTCGACGACCCTCACA GAAGCAGAGGAATAGGAGCTGCTGCCGCCATGAGCAATGCATCCGGCTCACGGCAGCAACCGCAACAGGGACGAACTCCTCACCATTTTGCTAACCTTAA TATCTCAGATTCCGAATCCAACTCAGATTCCAGTTCCGATTCCGATTCCGACGATACAGATTTCAGGGGCAAAAGCAAAGGGAAACAACCCGTCGCCGCA GTTCAGGAAAACGGCGGAAATGCATCAAGCTCACGGCCACAACAGAATCCCAATGCCGCCGGAGTTTCCTTCACCGAGGATTTATGGAGCAAACTGAAGA AATCAACAATAGTCAACACCCAGGGGTTCCAATCCAAGTTCATGACGCTCTCCCCAGCGACCCAGAGAGCGATCCGGAGAGCCATCGATAGCGATCCGAA GAACCCTTCGTTTCTGGTCCTCATCGGGAGATCCCATCTACAGTCAGGAAACATGGATCGCAGACGGGCACCTGATGGAAAATCTGCCGAAGATAACAGT GTGTGTGGTCGACGGAGAGAAGGGTGTGGTTAA
AA sequence Show only first row Show all	>Lus10021007 pacid=23182293 polypeptide=Lus10021007 locus=Lus10021007.g ID=Lus10021007.BGIv1.0 annot-version=v1.0 MAVNNLSKIFWQIIYPGDLEEGRLRISEDFVMKCGHLLSGEAVLKVPDGKVWKIGLAKQYFRREERIWLSAGSRRFIEYYSIGVGSLLIFEFRGSSRFQV SIFDLTACEIVYPVSSGNPDSSSDSDFDFDDPHRSRGIGAAAAMSNASGSRQQPQQGRTPHHFANLNISDSESNSDSSSDSDSDDTDFRGKSKGKQPVAA VQENGGNASSSRPQQNPNAAGVSFTEDLWSKLKKSTIVNTQGFQSKFMTLSPATQRAIRRAIDSDPKNPSFLVLIGRSHLQSGNMDRRRAPDGKSAEDNS VCGRRREGCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10021007 [exp]	0	1
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	3.6	0.8672
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10013405 [exp]	4.2	0.7237
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	7.1	0.7716
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	8.7	0.7716
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	10.0	0.7716
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036597 [exp]	11.2	0.6366
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	11.2	0.7716
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	12.2	0.7716
					Lus10017294 [exp]	13.2	0.7716
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10005516 [exp]	13.5	0.7547

Compare expression of checked genes

Lus10021007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.