Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49470 243 / 6e-80 Family of unknown function (DUF716) (.1) AT1G55230 153 / 1e-44 Family of unknown function (DUF716) (.1) AT1G55240 149 / 4e-43 Family of unknown function (DUF716) (.1) AT5G19870 132 / 5e-37 Family of unknown function (DUF716) (.1) AT1G32120 90 / 5e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023842 [exp] 509 / 0 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 130 / 8e-36 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10039191 [exp] 127 / 1e-34 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10014806 [exp] 90 / 5e-21 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 89 / 2e-20 AT1G32120 429 / 3e-142 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108900 [exp] 331 / 2e-114 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 143 / 9e-41 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 139 / 5e-39 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.003G216500 [exp] 138 / 6e-39 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 134 / 3e-37 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.001G132800 [exp] 99 / 3e-24 AT1G32120 377 / 2e-122 unknown protein Potri.003G100700 [exp] 98 / 8e-24 AT1G32120 382 / 2e-124 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10021008 pacid=23182351 polypeptide=Lus10021008 locus=Lus10021008.g ID=Lus10021008.BGIv1.0 annot-version=v1.0 ATGGGTAATTTCGTTGAGCACATCGTTCCAGGTTTAGCTCTATCTCTTCTTGGCTTATGGCACACCATCAACACCACCAAATCCTACTGCAACAACAAAG AAAACTTCACAGTCAAGTTTTGGTACCCCTTATTGTACAATCCTTTCTCCAGGCTCAAACACCTCGAGCCACTACTCATTCTGTCCTTCTCGATACTCGC GCTCGTTGACCAAGTCTTTGACTTTCCTCGCTTACACTTCACCTTCCACCTCATCAAGCTAGAACACGCAACCATGTTCCTCCATCTTGCAGTGTTTGCG GGTTTCGCCCTCTGCACAGAGATCATAGCTCAATCGACATCCGAACTCCTGTCGAGTGTAACGGGCATACTTGCTGCTTCAGTTTTCAGTCAGGAGCTTT TCCTCCTCCATTTCCACTCAGCTGACCACGTCGGCCTCGAAGGCCACTACCACTGGCTCCTTCAGCTCATAATACTCGTCTCCCTCCTAGCAGCTCTAGC TTCCACTTTTTCCCCCACCAGCTTCCCGGCAGCTCTCGTGCTTTCGGTTTCGGTAGTTTTCCAAGGGTGTTGGTTCATGAACATGGGGTGTATGCTGTGG CTTCCTCAGTTCACTCCTGAGGGCTGTTTCTTCAACAGCTCTCATCTTCGTTCTAGAGCGCTGGCGAACTTGCAGTTCAGCTGGATACTCTCCGGGATCA TGCTGTTGACAGGGTGTATTTGTTTGAAAGCGGCTGGGAGATCGAACCGGAGGAGGCTGCAGTATGAGCAACTCAACAGCAGAGCCGGGGCAGAGTGTCC TGTCGCCATTATTGAAGGTTTCAAGCAAGTTGATCCTTGA
AA sequence Show only first row Show all	>Lus10021008 pacid=23182351 polypeptide=Lus10021008 locus=Lus10021008.g ID=Lus10021008.BGIv1.0 annot-version=v1.0 MGNFVEHIVPGLALSLLGLWHTINTTKSYCNNKENFTVKFWYPLLYNPFSRLKHLEPLLILSFSILALVDQVFDFPRLHFTFHLIKLEHATMFLHLAVFA GFALCTEIIAQSTSELLSSVTGILAASVFSQELFLLHFHSADHVGLEGHYHWLLQLIILVSLLAALASTFSPTSFPAALVLSVSVVFQGCWFMNMGCMLW LPQFTPEGCFFNSSHLRSRALANLQFSWILSGIMLLTGCICLKAAGRSNRRRLQYEQLNSRAGAECPVAIIEGFKQVDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49470			Family of unknown function (DU...		Lus10021008 [exp]	0	1
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	4.0	0.7788
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10028372 [exp]	14.6	0.7691
AT4G33440			Pectin lyase-like superfamily ...		Lus10014799 [exp]	21.4	0.7760
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	26.2	0.7443
AT4G14760			kinase interacting (KIP1-like)...		Lus10041192 [exp]	42.4	0.7625
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	43.3	0.7592
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	58.6	0.7473
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	61.6	0.7137
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	77.7	0.7230
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	85.3	0.7257

Compare expression of checked genes

Lus10021008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.