Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023840 [exp] 138 / 6e-38 AT1G50030 239 / 2e-62 target of rapamycin (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147966 [exp] 42 / 1e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021010 pacid=23182337 polypeptide=Lus10021010 locus=Lus10021010.g ID=Lus10021010.BGIv1.0 annot-version=v1.0 ATGATGCAAGGACTCCACCACCAGCAACAGCAACTAGCAGCTCTCCTTTCCGTCGCTCTCGCCAAAGACGACTCCCCCGGCGGCGGCGGCGGCGGGCAGA ACGTTCGCTCTCGTTATCCAGTTGACCTGGTTCAGGAAGCTGTTCTGATGGTGAAGCAGCAAAGCAAGCTAAGAAGTTTTTTCGTGCATAGCATGCCGAA GAAAGCAGTCACCATGCACAAATCCAAGCTGGCAGGACTCGTATCTCCACTTAAAGGTTATCTCTTTTCTTTACCGTTCTGTTGGGGTCGATGTCCGGGA TCGTGGATATGTGGACCGGTGGATATGTGGACCGGTGGATATGTGGATATGTGGACCGGTGAAGTTGCCAAGCTGAAAGAGAAGGATCAGTCCATGAAAA CCCGTGAAGCTGCCAAGGTGGGTGGCGTGAGCGAGTATGTCGAGAACTTGAGGACGACGATGAAGCTGCCTGCATTCCTCCGGTGTTCCGAAGCTTCCTT GTCGATGATTCTCGACAGCTCCTGCGCTTGA
AA sequence Show only first row Show all	>Lus10021010 pacid=23182337 polypeptide=Lus10021010 locus=Lus10021010.g ID=Lus10021010.BGIv1.0 annot-version=v1.0 MMQGLHHQQQQLAALLSVALAKDDSPGGGGGGQNVRSRYPVDLVQEAVLMVKQQSKLRSFFVHSMPKKAVTMHKSKLAGLVSPLKGYLFSLPFCWGRCPG SWICGPVDMWTGGYVDMWTGEVAKLKEKDQSMKTREAAKVGGVSEYVENLRTTMKLPAFLRCSEASLSMILDSSCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021010 [exp]	0	1
AT4G08250	GRAS		GRAS family transcription fact...		Lus10008316 [exp]	1.4	0.9819
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10034300 [exp]	3.5	0.9692
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041044 [exp]	4.9	0.9730
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027480 [exp]	5.7	0.9703
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	6.3	0.9594
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10003063 [exp]	7.1	0.9513
					Lus10024873 [exp]	7.9	0.9638
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10029395 [exp]	11.5	0.9581
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013921 [exp]	11.8	0.9444
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	17.0	0.9436

Compare expression of checked genes

Lus10021010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.