Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23460 755 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 676 / 0 XLG2 extra-large GTP-binding protein 2 (.1) AT1G31930 627 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G26300 166 / 2e-45 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT4G01090 48 / 2e-05 Protein of unknown function (DUF3133) (.1) AT3G61670 48 / 2e-05 Protein of unknown function (DUF3133) (.1) AT2G46380 48 / 3e-05 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023838 [exp] 1296 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 761 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 718 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10010421 [exp] 606 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 603 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10003115 [exp] 155 / 5e-41 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10004784 [exp] 151 / 9e-40 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10042206 [exp] 51 / 2e-06 AT1G31930 54 / 1e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10001910 [exp] 51 / 3e-06 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109400 [exp] 901 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 852 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 786 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 780 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.001G135300 [exp] 643 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 632 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 631 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 624 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.006G219500 [exp] 158 / 1e-42 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 152 / 3e-40 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00503 [flax] [poplar] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10021012 pacid=23182384 polypeptide=Lus10021012 locus=Lus10021012.g ID=Lus10021012.BGIv1.0 annot-version=v1.0 ATGAAAGGAAGTAGATTTACTGATAAGGAGTGCTGCATTGTGTGTGGTGCAAAGTTTTGCTCTGGTTGTGTGCTGAGAGCAATGGGGTCTATGCCGGAAG GACGAAAGTGTGTGACTTGCATTGGTCAAAGGATCGATGAGGCGAGGAGGAAGAAGCTAGGGAAAAGTTCTAGGATGTTACAGCAGTTACTTCCTGATTT GGAAGTTAAGAACATAATGACTTCTGAAAGAAGCTGTCATGTGAATCAGTTACCGCCGGAGCTTGTGTATGTAAATGATCAGTATCTTAATGAAGAGGAG ATAGTGTTGTTGCAAGGATGTTCGAATCCGCCGAGGAAGCTGAAGCCTGGTTACTATTGGTATGATAAAGTGGCTGGTTTGTGGGGGAAGGAAGGAAAGA AACCTTGCCAAATAATCAGTGATCAGTTGAGCATTGGCGGTCACCTCCGACGAGATGCCAGCAAGGGAGACACCGGTATACTCGTGAACAACCGTGAAAT AACGAAACCGGAGCTCTTGATGCTGCAGTTGCTAGGTGTGAAATGCGATGGAACAAGTAGCTTTTGGGTTAGTGCAGATGGTTCCTATCAGGAAGAGGGC ATGAAGAATGTCAAAGGGAAAATATGGGACAAGCCTGGTGCAAAGGTAATATGTATGTTCTTGTCATTGCCAACGCCTCCCGATTCGAGTAGCTCCGCTA GAAAAGAGCCAAATGGTGCAGCCATTGTCCCCAAGGCAATTGAGCACAAAATGTTGGGAAAACTTCTTCTAGTTGGTAACAGAAAGTCTGGTACCAGTAC CATCTTCAAACAGGCAAAGATTGTCTACAACGTTCCTTTCTCCGAAGACGAGCGGCAAAGTATCAAGTCTGTCATCCAAAGTAATTTGTATGGATATATC GGTGTACTTCTAGAAGGACGTGAGCGATTCGAGGAAGAAAGTTTGATTGAAAGAGGGCAAAGCAGTTCTTCAGGTCAGACTGATGCTAACACCATCTACT CGATCGGTCCAAGGCTGAAAGCGTTCTCAGATTGGCTTCTCAAGGTCATGGTTTCGGGCAACTTGGAAACGGTTTTCCCTGCTTCGACTCGCGAATATGG ACCATTTGTCGAGGAGCTATGGAAAGATGATGCCATTCAAGCCACTTACAATCGAAGGGATGAAATACCGTCTCTTCCCAGAAATGCTACCTACTTCTTA GAACGGGCTGCTGAGATTGCAATGATGGACTATGAACCATCTGATATGGACATATTGTATGCTGAAGGGATAACTTCATCAAGAGGGCTCTCTTCCATGG AGTTTTTGTTTCCACAGTCGCCTCGAGATCTCTGTGATCACATTGGCTATCAGCATAATCCATCACAAAGGTACCAGCTCATCAGAACACATCCAAGAGT CCTGGGAGGGAACTGCAAATGGCTGCAAATGTTCGAAGACGTCGACATGGTCTTATTCTGCGTTTCGTTGACCGACTACGATCAGTGCTCCGAAAACAGT GACGGAGTCATCACAAACAACATGATGGCCAGCAAGCAACTATTCGAAAGCATAGTCACTCATCCAAAATTCGAGGACAAGAAGTTCCTTCTCATACTGA ACAAGTTCGATCTTCTAGAGGAGAAGATTGAGCGGGTCCCACTCACTCGATGCGAATGGTTCGAGGATTGGGATCCGGTTATTGGACATAATCCGGCCAG CAGTAGGAGCCGAGTCACCAACACTTCGTTAGCTCACCGCGCTTTCCAGTTCATTGCGATGAAGTACAAGAGACTGTATGCTTCTCTTGCCGATAAGAAG CTGTACGTGTCGCTGGTTACTGGGTTGGAAGGTGATCATGTGGACGAGGCTCTTAGATATGCGAGGGAGATTCTGAAATGGGACGAGGAATCTTTTGATG TTACAAATCATAACGAGATGTCTTCCACTAGCATCGAGGCTAGCACATCCGGATGA
AA sequence Show only first row Show all	>Lus10021012 pacid=23182384 polypeptide=Lus10021012 locus=Lus10021012.g ID=Lus10021012.BGIv1.0 annot-version=v1.0 MKGSRFTDKECCIVCGAKFCSGCVLRAMGSMPEGRKCVTCIGQRIDEARRKKLGKSSRMLQQLLPDLEVKNIMTSERSCHVNQLPPELVYVNDQYLNEEE IVLLQGCSNPPRKLKPGYYWYDKVAGLWGKEGKKPCQIISDQLSIGGHLRRDASKGDTGILVNNREITKPELLMLQLLGVKCDGTSSFWVSADGSYQEEG MKNVKGKIWDKPGAKVICMFLSLPTPPDSSSSARKEPNGAAIVPKAIEHKMLGKLLLVGNRKSGTSTIFKQAKIVYNVPFSEDERQSIKSVIQSNLYGYI GVLLEGRERFEEESLIERGQSSSSGQTDANTIYSIGPRLKAFSDWLLKVMVSGNLETVFPASTREYGPFVEELWKDDAIQATYNRRDEIPSLPRNATYFL ERAAEIAMMDYEPSDMDILYAEGITSSRGLSSMEFLFPQSPRDLCDHIGYQHNPSQRYQLIRTHPRVLGGNCKWLQMFEDVDMVLFCVSLTDYDQCSENS DGVITNNMMASKQLFESIVTHPKFEDKKFLLILNKFDLLEEKIERVPLTRCEWFEDWDPVIGHNPASSRSRVTNTSLAHRAFQFIAMKYKRLYASLADKK LYVSLVTGLEGDHVDEALRYAREILKWDEESFDVTNHNEMSSTSIEASTSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	2.0	0.8893
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10015918 [exp]	2.4	0.8836
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	4.2	0.8683
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	4.5	0.8692
AT2G42130			Plastid-lipid associated prote...		Lus10012003 [exp]	6.0	0.8892
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10005418 [exp]	7.9	0.8680
AT4G28703			RmlC-like cupins superfamily p...		Lus10014252 [exp]	8.0	0.8205
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	9.2	0.8308
AT5G35180			Protein of unknown function (D...		Lus10019068 [exp]	9.9	0.8384
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	12.0	0.8354

Compare expression of checked genes

Lus10021012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.