Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23460 58 / 4e-10 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 47 / 2e-06 XLG2 extra-large GTP-binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023838 [exp] 240 / 9e-75 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10000742 [exp] 52 / 6e-08 AT4G37090 116 / 2e-31 unknown protein Lus10019655 [exp] 51 / 1e-07 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10010421 [exp] 45 / 1e-05 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 42 / 0.0002 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109400 [exp] 72 / 6e-15 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 66 / 7e-13 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 64 / 3e-12 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 61 / 7e-11 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 45 / 9e-06 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 45 / 2e-05 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 44 / 3e-05 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 40 / 0.0008 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021013 pacid=23182349 polypeptide=Lus10021013 locus=Lus10021013.g ID=Lus10021013.BGIv1.0 annot-version=v1.0 ATGGCTGGGATGCTGAGGAAGGTTCTGCCTAAGTCCAAGGAGGATGGTGGTGGTAGTGGTGATGATGCTGATGAAGAAGAGTACGGAAAGAAAGTTGAAT ACTCGTTTGCTGTCGAGTATTCTGGGCCTCCACTTCCATATGACATCCCTAAAGTTGTGCCTGTTGAACTCCACAAGATCCCCATTGCTGCAACAATTGC CTCGGCTTCTCTATCGAATGCTGCTGCTGTTCCTATCATTCATCCAATTGTGCCGGCCAAGTCTCGAATTCCAGACAAGGTTAATGGTGATGAGAGGCTG ATGAACAACGGTTGTGATGCTGTTGCTGCTCAAACATTGCCAGGATGCTCAGAAATCGTGCAAGTACCGGATGATGATTATGCGAATCCAGGAGTCAGTG AATCAACGAAATCTGAATCCTTTTCGCGTTCTGTTTCGTCTGAGATTTTTTCTGGCAATGAGGAGTATGGTGATGAAGGAACAGCAGCTGCTCCTCAACA TGTGAGGAGACCATCGGCTGGGGGGGTTGACGTTTCGCGATCCTGA
AA sequence Show only first row Show all	>Lus10021013 pacid=23182349 polypeptide=Lus10021013 locus=Lus10021013.g ID=Lus10021013.BGIv1.0 annot-version=v1.0 MAGMLRKVLPKSKEDGGGSGDDADEEEYGKKVEYSFAVEYSGPPLPYDIPKVVPVELHKIPIAATIASASLSNAAAVPIIHPIVPAKSRIPDKVNGDERL MNNGCDAVAAQTLPGCSEIVQVPDDDYANPGVSESTKSESFSRSVSSEIFSGNEEYGDEGTAAAPQHVRRPSAGGVDVSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	0	1
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	6.8	0.7484
AT5G36930			Disease resistance protein (TI...		Lus10001366 [exp]	15.8	0.7298
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10029002 [exp]	16.3	0.6660
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	16.5	0.7736
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	16.7	0.6924
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10003261 [exp]	17.0	0.7078
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	19.9	0.6909
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10036932 [exp]	21.2	0.6395
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	22.0	0.7350
AT5G19210			P-loop containing nucleoside t...		Lus10010514 [exp]	22.4	0.7316

Compare expression of checked genes

Lus10021013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.