Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18950 380 / 9e-129 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 373 / 9e-126 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 368 / 1e-123 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 352 / 2e-117 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 352 / 2e-117 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 323 / 5e-108 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 200 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 197 / 8e-59 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 176 / 2e-50 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 165 / 3e-46 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023836 [exp] 605 / 0 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 417 / 9e-143 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 389 / 3e-132 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 384 / 1e-130 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 374 / 1e-126 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 360 / 3e-121 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 347 / 6e-116 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 299 / 8e-96 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 198 / 1e-58 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109500 [exp] 449 / 5e-156 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 424 / 9e-146 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 375 / 1e-125 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 363 / 2e-121 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 362 / 2e-121 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 360 / 2e-120 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 202 / 1e-59 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 196 / 7e-58 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 195 / 1e-57 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 181 / 4e-52 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10021014 pacid=23182353 polypeptide=Lus10021014 locus=Lus10021014.g ID=Lus10021014.BGIv1.0 annot-version=v1.0 ATGACAATGAACACTATCAACTACCGCCACCCACAAATCCGCCGCCTCAAACTCGCCGCACTCCTAAACTCCGACCTCTACCCCACCGTCGCCGATGACT ACAACAACAACAACGACAACAACGACATCATCATCAACAGTCCGACCTCCGATTCCTCTAGCTCGACCAGCACTCCACGCAACTCCAATTCCAGCAGCAA CTCCGATTCTCCGACGAACATAAACCACCTCCCGTTGTCTCCCTACGCTAAATCCCCCTGGATCGTCCCTTCCCCTGCTCTCATCACCAACGACGACGAC AGCGCCGATCACGATTGTCTGATCGGATCGATCGTCCGGCAGCAACAAGGACACGTGTACTCGCTCGCCGTCTCCGGCGACTTGCTGTACACCGGATCCG ACAGCAAGAACATCCGCGTGTGGAGGAATCTGGAAGAGTTCGCCGGATTCAAGTCGAAGAGCGGGCTGGTGAAGGCGATTGTTATCCACGGCGATCGGAT CTTCACCGGACACCAGGACGGCAAGATCCGGATCTGGAATGGAGCTTCTTACAAACGGGTCGGGAGCTTGCCGACTTTGAAGAACTCGATTAAGAGCTCG TTCAGTCCGAAGAACTACGTCGAGGTCCGGCGGAAGATGAGCGTCCTGAAAATCAAGCACTACGACGCCGTTTCTTCCATGGCCTTGGATTCCGATCTGG ACCTTTTGTACTCCGGATCTTGGGATAAAACCTTGAAAGTGTGGCGCATTTGTAACAGCGATTATAAATGCTTGGAGTCGATCAACGCTCACGACGACGC GATCAACGCTGTGGCAACCGGATTCGGCTCCTTAGTGTTCACCGGATCCGCCGACGGGACGGTGAAGGTGTGGAGGCGGGAGGTGGAAGGGGAAGCGAGA TTTAGTCATTCGTTTGTGGAGACGATTCTGGAGCAGGAGGAGGCGGTGACGGCTCTGGCGGTGAGCAGCGCCGGCGGCGGAGGAGGAGAATCGGTGCTGT ACTGCGGGTCGTCGGACGGGATGGTGAATTTCTGGGAAGGAGGTAAACAGTTATCGTACGGCGGAGCTCTGAGAGGGCACAAAACGGCGGTTCTCTGCGT GGTAACAGCGGGGAGGGAAGCCGGTGGGATCCACGTTTGCTTGTCTGTTTTGACGGGCCACAGTGGGCCCGTCAAGTGCCTCGCCGTCGATGAGGAGAAC GGAAACGATACAGAACGACGGCAGTTTAGAGTGTACAGTGGGAGCTTGGACAGTTCGGTGAAGATATGGCGCGTGGAGGATCACGCTCTTCCGGAGTGGA GAGAGTATAATCAAAATCAATCGCCTCGGATCAGTTTACAGAGGCGGTAA
AA sequence Show only first row Show all	>Lus10021014 pacid=23182353 polypeptide=Lus10021014 locus=Lus10021014.g ID=Lus10021014.BGIv1.0 annot-version=v1.0 MTMNTINYRHPQIRRLKLAALLNSDLYPTVADDYNNNNDNNDIIINSPTSDSSSSTSTPRNSNSSSNSDSPTNINHLPLSPYAKSPWIVPSPALITNDDD SADHDCLIGSIVRQQQGHVYSLAVSGDLLYTGSDSKNIRVWRNLEEFAGFKSKSGLVKAIVIHGDRIFTGHQDGKIRIWNGASYKRVGSLPTLKNSIKSS FSPKNYVEVRRKMSVLKIKHYDAVSSMALDSDLDLLYSGSWDKTLKVWRICNSDYKCLESINAHDDAINAVATGFGSLVFTGSADGTVKVWRREVEGEAR FSHSFVETILEQEEAVTALAVSSAGGGGGESVLYCGSSDGMVNFWEGGKQLSYGGALRGHKTAVLCVVTAGREAGGIHVCLSVLTGHSGPVKCLAVDEEN GNDTERRQFRVYSGSLDSSVKIWRVEDHALPEWREYNQNQSPRISLQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18950			Transducin/WD40 repeat-like su...		Lus10021014 [exp]	0	1
AT1G02570			unknown protein		Lus10025023 [exp]	6.2	0.8153
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	20.2	0.7905
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	24.2	0.8095
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023377 [exp]	24.7	0.7304
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	46.0	0.7481
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026113 [exp]	47.0	0.7167
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	79.9	0.6949
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10023792 [exp]	90.9	0.7121
AT1G75590			SAUR-like auxin-responsive pro...		Lus10033161 [exp]	91.5	0.7129
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10021427 [exp]	115.1	0.6996

Compare expression of checked genes

Lus10021014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.