Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42650 433 / 4e-148 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15440 277 / 7e-89 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT3G01900 49 / 6e-06 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021019 [exp] 663 / 0 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10018791 [exp] 405 / 4e-137 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10032739 [exp] 343 / 4e-113 AT5G42650 496 / 8e-173 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10030029 [exp] 290 / 7e-93 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 283 / 2e-89 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 273 / 5e-86 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 264 / 1e-82 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 257 / 5e-80 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 251 / 1e-77 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109700 [exp] 546 / 0 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 546 / 0 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 520 / 0 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 479 / 2e-167 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.002G130700 [exp] 447 / 3e-153 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 424 / 2e-144 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G155800 [exp] 310 / 2e-100 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.007G088018 [exp] 45 / 9e-05 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021015 pacid=23182326 polypeptide=Lus10021015 locus=Lus10021015.g ID=Lus10021015.BGIv1.0 annot-version=v1.0 ATGTCTTCTCCTCCGCCACCGTTGCTACCGTCGCCGGACCTCCCACTGAAACCCATCCCAGGAAGCTACGGCGTCCCGTTCATCTCCCCAATCATCGACC GTCAAAACTACTTCTACTACCAAGGCAGAGACGAATTCTTCAAAACCCTCATATCCAAACACAACAACTCCACCGTCATCCGCACCAACATGCCGCCGGG ACCCTTCGTCGCAGGTGACCCTAGGGTCATCGCCCTCCTCGACTCCTCTTCGTTCCTGGTCCTCTTCGACACGTCAAAAGTGGAGAAGCGCAACGTTCTC GATGGAACCTACATCCCTTCCGTCTCCTTCACCGGCGGGCACCGCATGCTGGCGTTTCTAGACCCGTCGGAGCCCAAACACGGCGCTCTCAAGTCTTTGC TTATGTCGTTTTTGAAGTTGAAGAGTGACACCTTCGTTCCTCTGTTTCGTAATTCTCTGGTGAAGATGTTTGCTGACGTGGATGGTGAGTTTGTGAAGGA TGGTAAAGTTGAGTTCAACGGTTTCGGCGACGGCATGTCGTTTGGTTTCTTGTTTCGACTCTTCTGCGACGGTAAGGATCCATCGGAGACCGTGATCGGA ACCCGAGGGCCGGCCGCAGTCAACAAGTGGCTGGCCCTCCAGCTAGCACCGCTAGCCTCCACACGAACCTTTCCGAAGTTCTTGAGCTTCATTGAGGATT TCTTCCTCCGCACGTTTCCCTTCCCATCCATCATAGTTCAATCCGACTACGACGATTTATACGCTGCGTTTTACAGCCACGCGACGTCGTTTCTTGACCT AGCCATCGAATCCTTCGGCGTGGAAAGAGACGAGGCTTGTCATAACTTGGTATTCGTCGCCGGCTTCAACGCCTTCGGTGCCATGAAGTCCCTCTTCCCA TCCGTGCTCAAGTGGGTAGCCGGCGCAGGAGAAAAATTGCAACACGACCTAGCTCACGAGATCAGGAGCGTTGTTAAGGGTGAAGGCGGGAAGGTGAGCT TGGCAGCGTTGGATGAGATGACTTTGACTAAATCAGTGGCCTACGAAATACTCAGGATTGACCCTCCGGTTCCGTTCCAGTACGGGAAGGCAAAGCAGGA TATGGTGGTCCGCAGCCACGACGCGTCGTTTGAGGTAAAGAAAGGGGAGATGTTGTTTGGATATCAGCCGTTCGCCACTAAAGACCTCAAGGTGTTTGAT CGTGCGGATGAGTTTGTCGGAGATAGGTTCTTGGGCATAGAGGGAGAAAAGATGTTACGGTACGTGTATTGGTCCAACGGTCGGGAGACTGAGGATCCGA CGGCTGGGAATAAGCAGTGTCCCGCGAAGGATCTGGTGTTGCTCATGTCTAGGCTATTTTTGGTGGAGTTTTTCTTGAGGTATGATGGGTTGACTGTTGA GTTCGATACGTTGCCGTTTTTAGGATGGTCGGTTACGATCACCTCCCTCATCAAAGCTACCACGGCCGTTTGA
AA sequence Show only first row Show all	>Lus10021015 pacid=23182326 polypeptide=Lus10021015 locus=Lus10021015.g ID=Lus10021015.BGIv1.0 annot-version=v1.0 MSSPPPPLLPSPDLPLKPIPGSYGVPFISPIIDRQNYFYYQGRDEFFKTLISKHNNSTVIRTNMPPGPFVAGDPRVIALLDSSSFLVLFDTSKVEKRNVL DGTYIPSVSFTGGHRMLAFLDPSEPKHGALKSLLMSFLKLKSDTFVPLFRNSLVKMFADVDGEFVKDGKVEFNGFGDGMSFGFLFRLFCDGKDPSETVIG TRGPAAVNKWLALQLAPLASTRTFPKFLSFIEDFFLRTFPFPSIIVQSDYDDLYAAFYSHATSFLDLAIESFGVERDEACHNLVFVAGFNAFGAMKSLFP SVLKWVAGAGEKLQHDLAHEIRSVVKGEGGKVSLAALDEMTLTKSVAYEILRIDPPVPFQYGKAKQDMVVRSHDASFEVKKGEMLFGYQPFATKDLKVFD RADEFVGDRFLGIEGEKMLRYVYWSNGRETEDPTAGNKQCPAKDLVLLMSRLFLVEFFLRYDGLTVEFDTLPFLGWSVTITSLIKATTAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021015 [exp]	0	1
					Lus10035753 [exp]	7.0	0.8565
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	9.5	0.8268
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	11.2	0.8173
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10010876 [exp]	13.3	0.8471
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	23.5	0.8521
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	25.9	0.8483
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	29.8	0.7869
AT4G05030			Copper transport protein famil...		Lus10016059 [exp]	31.5	0.7993
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	37.9	0.8409
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021049 [exp]	38.7	0.8176

Compare expression of checked genes

Lus10021015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.