Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52980 527 / 0 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT3G07050 113 / 5e-27 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT2G27200 78 / 2e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08410 77 / 4e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 62 / 3e-10 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023835 [exp] 745 / 0 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10028574 [exp] 112 / 1e-26 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 111 / 3e-26 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10004103 [exp] 81 / 5e-16 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 80 / 8e-16 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018858 [exp] 79 / 1e-15 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10006927 [exp] 61 / 5e-10 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 59 / 4e-09 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10031060 [exp] 44 / 0.0002 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G402500 [exp] 568 / 0 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.002G241100 [exp] 108 / 2e-25 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.009G017000 [exp] 82 / 1e-16 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 59 / 2e-09 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.012G083100 [exp] 44 / 0.0002 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G006300 [exp] 41 / 0.001 AT2G22870 434 / 2e-154 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08153 [flax] [poplar] NGP1NT NGP1NT (NUC091) domain CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10021017 pacid=23182347 polypeptide=Lus10021017 locus=Lus10021017.g ID=Lus10021017.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAGAAGGAGCAGAAGGTCAACGTATCGGGGAAGCCTAAGCACTCCCTCGATACCAACCGGAGCAATGGCGCCGCAAGCAGCAGTACCAATT CACGAAGTGCGGCCACCGTCCGGCGGCTGAAGATGTACAAAAACAGGCCTAAACGTGACAGTAAAGGCCACGTACTCAAGCACGATCTCCAATCGCAAGA CCTTCCCAACACTCGTATCCAGCCCGATCGACGCTGGTTTGGGAACACTAGAGTTGTAGGTCAAAAGGAGCTTGAAGTTTTCAGGGAAGAGATTGATTCA CGAAAAGCAAGCACCTATAATGTTATCTTGAGAGGAAAGAAGCTGCCTTTATCTCTCCTCAGTGATCACCAGAAGCAAGCAAGAGTTCATCTCCTTGATA CTGAGCCTTTTGGGGATACATTTGGACCAAAGAAAAAGAGGAAACGCCCAAGACTTTTGGCTTCAGATTACGAGTCTTTGGTTAAGAAAGCTTATGATTC TCATGATGCTTTTGAGGTGAAGTATGAGAATGCTGGGACTACCGAAGGAGATGATGAGGATGGATTTAGAGATCTTGTGCGGCACACAATGTTTGAGAAG GGCCAAAGTAAACGTATATGGGGTGAGCTGTACAAGGTTATAGACTCGTCTGATGTTGTTGTGCAAGTAAGTTGTGTTGCTATTATCATGATCAAAGAGT TTGGCTGGTTTGGTGAACTTGCATCAGGTCTTGTGCTGTATTCTTACAGCATTGCTCCTCTTCATGTGCTTTCCAGGTTTTGGATGCGAGGGACCCCCAA GTGCGATCTTGTCCCTGCATGGGCAACAAAAGGATGGCTCAGGGTATTATCCAAGGAATATCCAACTCTAGCATTCCATGCTAGTATCAATAAGTCATTT GGCAAGGGTTCTCTTCTATCAGTACTGCGACAGTATGCTCGCTTAAAGAGTGACAAACAAGCCATATCAGTTGGATTCGTTGGATATCCCAATGTTGGCA AGTCATCGGTTATCAACACATTGCGAACGAAGAATGTCTGCAAAGTTGCTCCTATACCTGGGGAGACTAAAGTGTGGCAGTACATAACTCTCACCAAGAG AATCTTTTTGATCGACTGTCCTGGAGTTGTTTATGAGAACAACAAAGATTCTGAAACAGATATAGTGCTCAAGGGTGTGGTTCGTGTGACAAACTTGGAA GATGCTACTGAACACATAGGGGAAGTTCTGAAACGTGTGAAAAAGGAGCACTTGAAACGGGCGTATAAGATAGATGACTGGTAA
AA sequence Show only first row Show all	>Lus10021017 pacid=23182347 polypeptide=Lus10021017 locus=Lus10021017.g ID=Lus10021017.BGIv1.0 annot-version=v1.0 MVKKKEQKVNVSGKPKHSLDTNRSNGAASSSTNSRSAATVRRLKMYKNRPKRDSKGHVLKHDLQSQDLPNTRIQPDRRWFGNTRVVGQKELEVFREEIDS RKASTYNVILRGKKLPLSLLSDHQKQARVHLLDTEPFGDTFGPKKKRKRPRLLASDYESLVKKAYDSHDAFEVKYENAGTTEGDDEDGFRDLVRHTMFEK GQSKRIWGELYKVIDSSDVVVQVSCVAIIMIKEFGWFGELASGLVLYSYSIAPLHVLSRFWMRGTPKCDLVPAWATKGWLRVLSKEYPTLAFHASINKSF GKGSLLSVLRQYARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYENNKDSETDIVLKGVVRVTNLE DATEHIGEVLKRVKKEHLKRAYKIDDW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	0	1
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	3.5	0.9254
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	3.6	0.9297
AT1G42440			unknown protein		Lus10030752 [exp]	4.5	0.9215
AT1G42440			unknown protein		Lus10013232 [exp]	5.3	0.9158
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	5.5	0.9255
AT4G28200			unknown protein		Lus10004616 [exp]	6.5	0.9169
AT1G53645			hydroxyproline-rich glycoprote...		Lus10005585 [exp]	9.2	0.8578
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	9.4	0.9123
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	9.8	0.8910
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	10.1	0.9021

Compare expression of checked genes

Lus10021017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.