Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18940 236 / 3e-77 clast3-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023834 [exp] 368 / 7e-129 AT3G18940 369 / 9e-130 clast3-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G148500 [exp] 289 / 7e-98 AT3G18940 368 / 3e-129 clast3-related (.1) Potri.004G148700 [exp] 289 / 1e-97 AT3G18940 368 / 3e-129 clast3-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [flax] [poplar] PUP PF09754 [flax] [poplar] PAC2 PAC2 family
Representative CDS sequence Show only first row Show all	>Lus10021018 pacid=23182381 polypeptide=Lus10021018 locus=Lus10021018.g ID=Lus10021018.BGIv1.0 annot-version=v1.0 ATGGCCCAATTTGAAGCCCAAAGCGTCTTTCTTGTTCCTGAAGTCGTCCGAACTCCGACGACTGCCGCGCTTAAACCTGCCAGAGACCTAGCGACGATTA GATCGCCGTTCACGAATATCATCGGAAGACATCACACACATACACACACTCGACGAAATGGAATTCATAACCGAGCCTGGAAAGCAAGCCCACCCAGATT GTTCGACCCTCATACTGCTTATCAGTCACCTGTCAATGCAATGGCTCTCGTCCAGCAGCGGTCTCCGGTTGTTAAGGTGGGTATGATGGTTGAATTTGCT AAGAACTTGGCTGAGTTTGCTGCTGCTAGTGGAAAGAATCATGTTGTTATTCTCTCCAGCTTGGAGTTTGCAAGGTGGCAAAAGATTGATATGTCGAGCA CTGAATCTCTTGAGTATAATGTTGATGAACTTACTGAGAGTTGGAAGCATGTGATTCTCAGTGGTTTGCAGATATACTACCTCTCAACCTCGAATGCAGA TGGAACAGATGGTTATTGTGGACAACTTGGGTGGAAAAAGCTTCAGGATTATGATCCTGACCAAAGATCTTGGAAGTATCTCAGCAGTTTAGCTGAAGGT AGCAGCATAATGCACGAAAGTAGCTTGCCATTTGAGGATGAACCAGAAGAAGAAGATTACTGCGCAAGTCTACCTTTCGCTGCTCTTTTCTCGTGCTTGA AGGCCAAAGGTTTGAAGGTCACATGCATATTGTGTTACTGCTCCGAGGGCGACAACATGGCTGATTCTTTCGAGCTAGCAGAGGCAGCATCCAAGCTCCT CCAGCTGAAACCTGATAATTTCATCGCCGGAGACGATAGTAAGTGGCGCATCCCACTTTCATGGAACACCTTGTATGGACCACCTCCAGATCTGTCCATG TTTTAG
AA sequence Show only first row Show all	>Lus10021018 pacid=23182381 polypeptide=Lus10021018 locus=Lus10021018.g ID=Lus10021018.BGIv1.0 annot-version=v1.0 MAQFEAQSVFLVPEVVRTPTTAALKPARDLATIRSPFTNIIGRHHTHTHTRRNGIHNRAWKASPPRLFDPHTAYQSPVNAMALVQQRSPVVKVGMMVEFA KNLAEFAAASGKNHVVILSSLEFARWQKIDMSSTESLEYNVDELTESWKHVILSGLQIYYLSTSNADGTDGYCGQLGWKKLQDYDPDQRSWKYLSSLAEG SSIMHESSLPFEDEPEEEDYCASLPFAALFSCLKAKGLKVTCILCYCSEGDNMADSFELAEAASKLLQLKPDNFIAGDDSKWRIPLSWNTLYGPPPDLSM F

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18940			clast3-related (.1)		Lus10021018 [exp]	0	1
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	2.8	0.6740
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	6.0	0.6938
AT4G12680			unknown protein		Lus10016056 [exp]	10.6	0.6364
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	10.6	0.6605
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	15.0	0.6711
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	15.8	0.6507
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	20.8	0.6343
AT3G58110			unknown protein		Lus10039903 [exp]	28.8	0.6414
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	31.6	0.6117
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	35.9	0.6296

Compare expression of checked genes

Lus10021018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.