Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42650 449 / 3e-154 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15440 265 / 2e-84 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT4G39510 51 / 1e-06 CYP96A12 "cytochrome P450, family 96, subfamily A, polypeptide 12", cytochrome P450, family 96, subfamily A, polypeptide 12 (.1) AT3G10560 47 / 2e-05 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT3G01900 47 / 3e-05 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT2G25160 46 / 5e-05 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G61040 45 / 8e-05 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT4G31970 45 / 9e-05 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT3G10570 45 / 0.0001 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT4G31950 45 / 0.0001 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021015 [exp] 687 / 0 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10018791 [exp] 407 / 7e-138 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10032739 [exp] 329 / 1e-107 AT5G42650 496 / 8e-173 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10030029 [exp] 305 / 3e-98 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 289 / 6e-92 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 276 / 4e-87 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 272 / 1e-85 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 271 / 3e-85 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 267 / 6e-84 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G148900 [exp] 559 / 0 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 551 / 0 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 546 / 0 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 486 / 8e-170 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.002G130700 [exp] 445 / 2e-152 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 439 / 4e-150 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G155800 [exp] 328 / 2e-107 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.010G116300 [exp] 54 / 1e-07 AT5G24910 376 / 3e-125 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.001G003000 [exp] 50 / 2e-06 AT5G36110 389 / 3e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G002800 [exp] 49 / 4e-06 AT5G36110 415 / 1e-141 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021019 pacid=23182334 polypeptide=Lus10021019 locus=Lus10021019.g ID=Lus10021019.BGIv1.0 annot-version=v1.0 ATGTCATCGCCGCCGACGTCATCTACCTCGCCGGACCTCCCACTGAGCCCCATCCCGGGAAACTACGGCATCCCATTCATCTCCCCAATCATCGACCGTC TAAACTTCTTCTACTACCAAGGCAGATACGAATTCTTCAAAACCCTCGTCGCCAAACACAACAACTCCACCGTCGTCCGCACCAACATGGCCCCGGGACC CTTCATCGCCGGCAACCCAAAGGTCATCGCGTTACTCGACTCCGCCTCGTTCCCCATCCTCTTCGACACTTTGAAAGTCGAGAAGCGTAACGTGCTCCTC GGAACTTACGGCCCCTTCGTCTCCTTCACGGGTGGCCACCGCGTGCTGGCCTTCCTAGACCCGTCGGAGCCTAGACACGACGCTATGAAGTCCTTCCTCA TGTCGTTTCTTTGTTCCAAGCGCGAGGAGTTTATCCCTCTTTGTCGAGCTTCGTTGTTCGAGATATTTGTGGATGTCGATGGCCAGTTTTCGCGGCGAGG CAAGGTCGAGTTCAACGCTCTCAGCGACGGCATGGCCTTCGACTTCATGTTCCGACTCTTCTGCGAAGCCAAGGACCCTTTAGAGACGGAGATCGAGGCT AGAGGCGCAACACTAGCAGACAGATGGCTAGCTCCACAACTTCTCCCACTCTCAACTCTACGAATCTTCCCAAAGTTCTTCAGCTTCATCGAGGATTTCT TCATCCACACGTTTCCCTTCCCATTCTTCCTGGTCAAATCCGACTACAACAAGCTATACACTGCATTTTACAACCACGCTTCCTCGTTTCTAGACCGAGC CGTCGAGTCCTTGCCCTTACAAAGAGACGAGGCATGCCACAACTTGGTATTCCTCGCAGCCTTCAACGCCTACGGGGCGATGAAGGCGCTTTTCCCGTCC ATAATCAAGTGGGTCGCCATCTCGGGAGAAAAGCTACAACTCGACATGGCTCGCGAAATCAGGACCGTTGTCATGGAGGGAGGCGGCGAGCTCGGTTTTG GATCGTTGGATAAGATGACTTTGACTAAATCAGTGGTCTACGAGGTGCTTAGGATCGAGCCTCCGATCCCGTTCCAGTACGGGAAGGCGAAGGAGGATAT GGTGGTACGTAGCCACGACGCTGCGTTTAAGGTGAAGAAAGGGGAGATGTTATTTGGATATCAGCCGTTGGTTACTCGAGATCCGAAAGTTTTCGATCGT GCGGAGGAGTTTGTCGGGGATAGATTCGTGGGGAAGGATGGGGGGCAGATGTTGAAGTATGTGTATTGGTCCAATGGTCGGGAGACTGAGGATCCGACGG CTGGGAGTAAACAGTGTCCTGGGAAGGATCTGGTGGTGCTGATGTCTAGGTTGCTTTTGGTGGAGTTTTTCTTGAGGTATGATAGATTGACGGTTGAGAC TGAAGAGTTACCGTTTGGATCATCATCTGTGACCATCACCTCGTTGACCAAAGCTACCACGAGTCACGGCCGTTTGATCAGTTGA
AA sequence Show only first row Show all	>Lus10021019 pacid=23182334 polypeptide=Lus10021019 locus=Lus10021019.g ID=Lus10021019.BGIv1.0 annot-version=v1.0 MSSPPTSSTSPDLPLSPIPGNYGIPFISPIIDRLNFFYYQGRYEFFKTLVAKHNNSTVVRTNMAPGPFIAGNPKVIALLDSASFPILFDTLKVEKRNVLL GTYGPFVSFTGGHRVLAFLDPSEPRHDAMKSFLMSFLCSKREEFIPLCRASLFEIFVDVDGQFSRRGKVEFNALSDGMAFDFMFRLFCEAKDPLETEIEA RGATLADRWLAPQLLPLSTLRIFPKFFSFIEDFFIHTFPFPFFLVKSDYNKLYTAFYNHASSFLDRAVESLPLQRDEACHNLVFLAAFNAYGAMKALFPS IIKWVAISGEKLQLDMAREIRTVVMEGGGELGFGSLDKMTLTKSVVYEVLRIEPPIPFQYGKAKEDMVVRSHDAAFKVKKGEMLFGYQPLVTRDPKVFDR AEEFVGDRFVGKDGGQMLKYVYWSNGRETEDPTAGSKQCPGKDLVVLMSRLLLVEFFLRYDRLTVETEELPFGSSSVTITSLTKATTSHGRLIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021019 [exp]	0	1
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10019419 [exp]	8.1	0.9661
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10020662 [exp]	11.5	0.9661
AT1G08790			Protein of unknown function (D...		Lus10021997 [exp]	14.1	0.9661
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010756 [exp]	16.2	0.9661
					Lus10010778 [exp]	18.2	0.9661
					Lus10011759 [exp]	19.9	0.9661
					Lus10022145 [exp]	21.5	0.9661
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	23.0	0.9661
					Lus10024550 [exp]	24.4	0.9661
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	25.7	0.9661

Compare expression of checked genes

Lus10021019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.