Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50830 211 / 1e-69 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT4G37220 208 / 1e-68 Cold acclimation protein WCOR413 family (.1) AT2G15970 181 / 4e-58 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2) AT2G23680 118 / 3e-33 Cold acclimation protein WCOR413 family (.1.2) AT1G29390 62 / 5e-12 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 56 / 2e-09 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023833 [exp] 249 / 2e-85 AT3G50830 175 / 3e-56 cold-regulated 413-plasma membrane 2 (.1) Lus10012034 [exp] 237 / 6e-80 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10027946 [exp] 235 / 3e-79 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 233 / 2e-78 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 232 / 5e-78 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 212 / 6e-70 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1) Lus10015258 [exp] 51 / 8e-08 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10025378 [exp] 51 / 9e-08 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 49 / 9e-07 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109800 [exp] 265 / 6e-91 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 242 / 6e-82 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.007G033801 [exp] 229 / 6e-77 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 61 / 9e-12 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10021020 pacid=23182426 polypeptide=Lus10021020 locus=Lus10021020.g ID=Lus10021020.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGAGCTACTTAGCGATGAAGACAGACAGAGGGAGCAGCAGCTTGGGGAGCGATTTGATCTCTTCCGATGTCAAAGAGCTAGCTTTAGCGG CGAAGAAGCTCGTGATTCATCTGGGCATCGTCGCCGGATTCGGCACCTCTTTCCTCGAGTGGCTTGCTGCTATTGCCGCCATTTACCTTCTGATATTGGA TCGGACGAATTGGAAGACGAACATTCTTACTGGGTTACTCATCCCTTACATCTTCTTCACCCTCCCAACTTTCCTCTTTAGCTTACTCAGAGGGGAGTTC GGGAAATGGGTTGCTTTCATTGCTGTTGTGCTACGCCTGTTCTTCCCCGACCGCTTCCCAGATTGGCTAGAGATGCCTGGAGCTTTGATTCTACTGATAG TGGTTGCTCCGAGTTTGTTCGCTTCTACACTGAGGAACAACTTGGTCGGTGTGGCCATTTGCCTTGTGATAGCTTGCTACTTGCTGCAAGAACACATTAG AGCATCTGGTGGGTTCAGAAACTCGTTTACGAAAGCCAACGGTATCTCCAACACCATCGGCATTATCCTCCTCTTTGTTTATCCTGCCTGGGCTTTGATT GTTGACTTGGTCTGA
AA sequence Show only first row Show all	>Lus10021020 pacid=23182426 polypeptide=Lus10021020 locus=Lus10021020.g ID=Lus10021020.BGIv1.0 annot-version=v1.0 MGKKSYLAMKTDRGSSSLGSDLISSDVKELALAAKKLVIHLGIVAGFGTSFLEWLAAIAAIYLLILDRTNWKTNILTGLLIPYIFFTLPTFLFSLLRGEF GKWVAFIAVVLRLFFPDRFPDWLEMPGALILLIVVAPSLFASTLRNNLVGVAICLVIACYLLQEHIRASGGFRNSFTKANGISNTIGIILLFVYPAWALI VDLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37220			Cold acclimation protein WCOR4...		Lus10021020 [exp]	0	1
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	7.3	0.8916
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	13.9	0.8898
AT1G29760			Putative adipose-regulatory pr...		Lus10034735 [exp]	19.6	0.8809
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	29.5	0.8780
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	29.6	0.8825
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	30.6	0.8733
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10024887 [exp]	31.0	0.8659
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	31.3	0.8824
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	33.7	0.8769
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	34.0	0.8805

Compare expression of checked genes

Lus10021020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.