Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49430 955 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT1G64400 822 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G23850 801 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 790 / 0 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 612 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 495 / 3e-167 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 472 / 3e-158 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G04350 342 / 9e-108 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 308 / 2e-95 LACS9 long chain acyl-CoA synthetase 9 (.1) AT3G23790 166 / 3e-43 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023832 [exp] 1320 / 0 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032380 [exp] 780 / 0 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10001830 [exp] 706 / 0 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10023089 [exp] 684 / 0 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10032840 [exp] 605 / 0 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 576 / 0 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 477 / 4e-160 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 475 / 3e-159 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 467 / 5e-156 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109900 [exp] 1090 / 0 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.001G091900 [exp] 809 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 809 / 0 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.002G192400 [exp] 613 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.010G090200 [exp] 484 / 9e-163 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 480 / 2e-161 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.014G169400 [exp] 333 / 4e-104 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 313 / 4e-97 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 298 / 9e-93 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 298 / 2e-91 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10021021 pacid=23182355 polypeptide=Lus10021021 locus=Lus10021021.g ID=Lus10021021.BGIv1.0 annot-version=v1.0 ATGGCAATGGAGGGGGATCATCAGTACGAGTACTTGGTGAAGGTTGCAGAGGCAGAGGAATCTGCAGCAGGCCCTGTTTACAGAAGCATCTACGCCAAAG ATGGCCTTCTCCAAGTTCCTGAGGATCTCCATTCTCCATGGCACTTCTTCAGTGATTCGGCAGCTAAGTACCCGAACAATCCGATGCTGGGTCGTCGTGA AGTCGTAGAATCCAAGGCAGGAGCATACACATGGCTAACTTACAAACAAGTTCATGATTCAGCCTTGAAGATCGGTTCAGCAATGAGAACCAAAGGAATC AATCCTGGTGATCGTTGTGGTATCTACGGATCTAACAGCCCTCAATGGATCACTGCAATGGGGGCTTGTAACAGCCAGGCTGTCACTTATGTCCCGCTCT ACGACACCCTCGGTGCTAATGCAGTGGAGTTCATCATCAATCATGCTGAAGTGTCCATTGCCTTTGTTCAAGAGAACAAGCTTCCTGCTGTTCTGTCCTG CCTCTCAAACTGCTGTTCATATTTAAAAACTATCATTAGCTTTGGAGGTGTTTCAGCCGCACAGAAGAAGGAAGCTGAGGGGCTAGAGGTGTCTTGTTAC TCTTGGGATGAATTTTCCCAGTTGGGAAGTTCGGATTGTGAGCTGCCTCCGAAGAAAAAGACAGACATCTGCAACATAATGTACACCAGTGGAACTACTG GAGAACCTAAAGGAGTTATCATCTCGAATGGAGCTCTCGTGGCTGAAGTTCTTTCTGTTGATCAATTACTTTTTCTGACCGATAGAGCGCTTGATGAAGA AGATGTATACTTCTCTTTCTTGCCTTTGGCTCACATCTATGACCAAGTAATGGCGAGCTACTGCATCTCGAAAGGCGCCTCCATAGGGTTCTGGCAAGGG GATGTAAGATTCTTGATGGAAGATCTTCAGATGTTGAAGCCAACTATGTTTTGTGGCGTTCCACGAGTTTACGATCGCATTTACAGTGGTACAATGAGCA AGGTCGCATCTTCAGGGGCAGTAAGGAAAAAGATCTTCGATTTCGCGTATAACTACAAGCTGGGAAATCTTGAGAAAGGATTCCCACAAGCCAAGGCTGC ACCATTCTTCGATAAAATCGTCTTTGAAAAGATAAAATTAGCACTGGGAGGGAGAGTTCGGATTCTGTTATCTGGTGCTGCACCTTTGCCTAGACATGTT GAGGAGTTCCTAAGGGTCATTTCCTGCTCCACTTTATCACAGGGCTATGGCCTCACCGAAAGTTGCGGTGGATGCTTCACCTCCATAGGTGATATATACC CTATGGTGGGGACAGTTGGTGTCCCCATGCCAACCATTGAGGCCCGGCTCGAGTCCGTTCCGGAGATGGGATACGACGCGCTAGCAAGCGTGCCACGTGG AGAGATTTGCCTGAGGGGGAACACCTTGTTCTCCGGTTACCACAAGCGCGAAGATCTGACCAGAGAAGTTCTTGTGGACGGTTGGTTTCACACAGGTGAC ATTGGCGAGCTGCAACCAAATGGAGCCATGAAGATCATTGACAGAAAGAAGAACATCTTCAAGCTGTCGCAAGGCGAATATGTTGCAGTGGAGAGTCTCG AAAACACCTACTCGAGATGCCCCGTCATAGCTTCAATATGGGTATATGGAAACAGTTTCGAGTCGTTCCTGGTCGCGGTTGTGATCCCGGAGAAGAAATC GCTCGAGGACTGGGCAGCACAGCATAATGTGAAGGCTGATGATTATATTTCTCTGTGCAAGAACAAGCAGGCCAGAAAGTACATTCTGGATGAGCTGAAC ATTATTGGCAAGAATCACCAACTGAAAGGGTTCGAGATGCTGAAAGCTGTGCACCTGGAACCGGTTCCATTCGACATGGAGAGGGACCTTGTAACCCCAA CATTCAAGCTCAAGAGACCTCAGTTACTGAAATATTACAAGGAATGCATTGATCAACTTTACCAGGAAGCTAAGGAGTCCAAGCCTTGA
AA sequence Show only first row Show all	>Lus10021021 pacid=23182355 polypeptide=Lus10021021 locus=Lus10021021.g ID=Lus10021021.BGIv1.0 annot-version=v1.0 MAMEGDHQYEYLVKVAEAEESAAGPVYRSIYAKDGLLQVPEDLHSPWHFFSDSAAKYPNNPMLGRREVVESKAGAYTWLTYKQVHDSALKIGSAMRTKGI NPGDRCGIYGSNSPQWITAMGACNSQAVTYVPLYDTLGANAVEFIINHAEVSIAFVQENKLPAVLSCLSNCCSYLKTIISFGGVSAAQKKEAEGLEVSCY SWDEFSQLGSSDCELPPKKKTDICNIMYTSGTTGEPKGVIISNGALVAEVLSVDQLLFLTDRALDEEDVYFSFLPLAHIYDQVMASYCISKGASIGFWQG DVRFLMEDLQMLKPTMFCGVPRVYDRIYSGTMSKVASSGAVRKKIFDFAYNYKLGNLEKGFPQAKAAPFFDKIVFEKIKLALGGRVRILLSGAAPLPRHV EEFLRVISCSTLSQGYGLTESCGGCFTSIGDIYPMVGTVGVPMPTIEARLESVPEMGYDALASVPRGEICLRGNTLFSGYHKREDLTREVLVDGWFHTGD IGELQPNGAMKIIDRKKNIFKLSQGEYVAVESLENTYSRCPVIASIWVYGNSFESFLVAVVIPEKKSLEDWAAQHNVKADDYISLCKNKQARKYILDELN IIGKNHQLKGFEMLKAVHLEPVPFDMERDLVTPTFKLKRPQLLKYYKECIDQLYQEAKESKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	0	1
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	2.0	0.9273
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	2.8	0.9265
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	3.9	0.9153
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	5.7	0.8698
AT5G06440			unknown protein		Lus10029362 [exp]	7.1	0.7452
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	7.7	0.8576
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	11.2	0.8438
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	11.3	0.8377
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	11.4	0.8590
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10026433 [exp]	11.4	0.8057

Compare expression of checked genes

Lus10021021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.