Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57830 543 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 513 / 2e-175 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 371 / 3e-119 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 299 / 5e-92 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 271 / 2e-81 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 253 / 5e-75 Leucine-rich repeat protein kinase family protein (.1) AT5G62710 192 / 6e-53 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 190 / 7e-52 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 182 / 3e-49 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 180 / 3e-48 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023831 [exp] 638 / 0 AT3G57830 431 / 8e-146 Leucine-rich repeat protein kinase family protein (.1) Lus10023830 [exp] 533 / 0 AT3G57830 382 / 7e-129 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 343 / 3e-108 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 342 / 3e-108 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 240 / 1e-69 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 233 / 4e-67 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 219 / 2e-62 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 195 / 4e-54 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 192 / 3e-53 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050800 [exp] 581 / 0 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 574 / 0 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 353 / 2e-111 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 342 / 5e-108 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 301 / 1e-92 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 279 / 3e-84 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 265 / 4e-79 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 253 / 9e-75 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 216 / 1e-60 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 207 / 2e-57 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021022 pacid=23182378 polypeptide=Lus10021022 locus=Lus10021022.g ID=Lus10021022.BGIv1.0 annot-version=v1.0 ATGCAGTTCATCTTCATCATCTGCTCTCTTCTCCTTCTCCTTCTTCCCCAAAGGAACTCCCTAACTCCCGAAGGCTTAGCCTTACTCTCCCTCAAATCCG CGATCACATCCGACCCGACCCACTCACTCTCCTCCTGGTCCGAATCCGACCCAACCCCATGCCACTGGCACGGCGTCTCCTGCTCCGACAACAACAACCA ATTAGTCACCTCAATCTCCCTCCAAAACCTCCGCCTCGCCGGATACATTTCATCCGAGCTCGGCCTCCTCCGCTCCCTCCGCTCTCTCGATTTGTCCAAG AACAGTCTCTCGGGTCGGATCCCTGACTCCATCGGGTCGCTCCAGCTCCTCTCAAGGCTCGATCTTTCGTCCAATCAGCTGGAGGGTTCCCTCCCGGAGT CTCTTGTCGAGCTCAGGAGCCTCACGGGGACGCTGAATCTGTCGTGGAATGGCTTCTCAGGGGAGATCCCGGAATCTTACGGACGGTTTCCGGTTCGGGT CAGTTTGGATTTGGGGCATAATAATCTGACCGGTAAGGTTCCTTTGGTTGGGTCGCTGGTTAACCAAGGTCCGAGCGCCTTTTCCGGAAATCCGAGTCTT TGTGGGTTTCCTCTGCAGACTCCTTGCCCTGAAGCTGTGAATGTGAACATCCCAGCGGAGGAAAGCCGCCGTCGAGGCGACGGCAGCGGAGAGAATCGGC TCCGCGATGTGGAGAAGTCGAAAGAGAGGAGCGGATCGGTGGCGGTTCCGTTGATCTCGGGGGTGACGGTGGTGATCGGGGCGATCACAGTTTCTGCGTG GCTAGTCCGGAGGAAATACGTGGCGGCCGCGACGGGGAAGGGAAAAATGGGTAAAGACGAAGAAGAAGCTAAAGGGAGCAAAAAGGAAACGAACATTATC GTCCACGGTGGTGAGGCGATGACGAAGGAGGAGGAAGGCGAAGGGCAGAATGGTAAATTCGTGGTGATGGACGAAGGGTTCTGTTTGGAACTGGAGGATC TGCTGAGGGCGTCGGCTTATGTGGCGGGGGAAGGGAGGAGCGGGATACTTTACAAGGTGGTGGTCGGAGGGAGAGGCGGAGCTGGGTCGGTGGTGGCGGT GAGGAGACTGAACGACGGCGGCGCGTGGCGGCTCAAGGAGTTTGAGTCGGAAGTCGAAGCGATTGAGAAGGTCCAACATCCGAATATCGTACGGGTTAGA GCCTATTACTACGCCAGCGATGAGAAATTGCTCGTCTCCGATTTCATCCGCAATGGGAGCCTCTACACCGCGCTGCACGGGGGACCTGGGAATCTGCTGG CACCACTGCCGTGGGCAGCGAGGCTAAGAATTGCGCAAGGAGCAGCAAGGGGGATAATGTACATACACGAGTACACCCCACGGAAGAACGTCCATCACCA TGGCAACTTAAAGTCGACGAAGATCCTCCTCGACTCCGAGCTTCAGCCTTACATATCCGGGTTCGGACTCATACGTCTGGTCTCCACAACCAGCAGTTCC AAGATCCCCACCTCTACGACCACTTCAGCACCATCCAAGAATAAGCAGCATTTTTTGAACAGCTCGATTTCGATTCCAACACCCTGGAATAACGCTTACT TGGCACCCGAGGCACGAGCATTGGGAGCCAAGCTGACTCAGAAATGCGATGTGTACGCGTTCGGGATCGTACTGATGGAGCTTCTGACGGGAAAGCTGCC CGATGCTGGGTTGGAAGGTGGTGTGAGGAAGGTGTTTCGCGAAGAAGGGCCATTGTTTGAGGTTATTGACGAGTCGATGTTGGGTGAGGTAGGTGCCAAG ACGCAGATTTTGGCGGTGTTTCATATTGCGTTGAGTTGTACGGAGGTGGATCCGGAGGTGCGTCCTAGGATGAAGTTCGTGTCGGAGAGCCTGGATCGGA TAAAAATGGCGGTGAAGTAG
AA sequence Show only first row Show all	>Lus10021022 pacid=23182378 polypeptide=Lus10021022 locus=Lus10021022.g ID=Lus10021022.BGIv1.0 annot-version=v1.0 MQFIFIICSLLLLLLPQRNSLTPEGLALLSLKSAITSDPTHSLSSWSESDPTPCHWHGVSCSDNNNQLVTSISLQNLRLAGYISSELGLLRSLRSLDLSK NSLSGRIPDSIGSLQLLSRLDLSSNQLEGSLPESLVELRSLTGTLNLSWNGFSGEIPESYGRFPVRVSLDLGHNNLTGKVPLVGSLVNQGPSAFSGNPSL CGFPLQTPCPEAVNVNIPAEESRRRGDGSGENRLRDVEKSKERSGSVAVPLISGVTVVIGAITVSAWLVRRKYVAAATGKGKMGKDEEEAKGSKKETNII VHGGEAMTKEEEGEGQNGKFVVMDEGFCLELEDLLRASAYVAGEGRSGILYKVVVGGRGGAGSVVAVRRLNDGGAWRLKEFESEVEAIEKVQHPNIVRVR AYYYASDEKLLVSDFIRNGSLYTALHGGPGNLLAPLPWAARLRIAQGAARGIMYIHEYTPRKNVHHHGNLKSTKILLDSELQPYISGFGLIRLVSTTSSS KIPTSTTTSAPSKNKQHFLNSSISIPTPWNNAYLAPEARALGAKLTQKCDVYAFGIVLMELLTGKLPDAGLEGGVRKVFREEGPLFEVIDESMLGEVGAK TQILAVFHIALSCTEVDPEVRPRMKFVSESLDRIKMAVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	0	1
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10041746 [exp]	5.5	0.9273
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	5.7	0.9458
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	6.0	0.9339
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10027980 [exp]	8.5	0.9328
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	9.8	0.9363
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	10.8	0.9362
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	10.9	0.9339
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	11.2	0.9342
AT5G45590			Ribosomal protein L35 (.1)		Lus10010406 [exp]	12.0	0.9154
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	12.2	0.9368

Compare expression of checked genes

Lus10021022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.