Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12160 384 / 6e-132 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 355 / 6e-121 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT5G65270 305 / 4e-101 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 303 / 2e-100 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G07410 268 / 6e-87 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G28550 267 / 1e-86 AtRABA1i RAB GTPase homolog A1I (.1) AT5G60860 267 / 1e-86 AtRABA1f RAB GTPase homolog A1F (.1) AT1G16920 267 / 2e-86 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G45750 266 / 2e-86 AtRABA1c RAB GTPase homolog A1C (.1) AT1G09630 266 / 3e-86 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023829 [exp] 634 / 0 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10016284 [exp] 376 / 6e-129 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 375 / 1e-128 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10000637 [exp] 314 / 1e-104 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10002725 [exp] 313 / 4e-104 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10023153 [exp] 312 / 5e-104 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10014732 [exp] 311 / 3e-103 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10035924 [exp] 310 / 7e-103 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 309 / 9e-103 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050400 [exp] 373 / 7e-128 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 367 / 2e-125 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.001G270100 [exp] 354 / 3e-120 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 323 / 4e-108 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 316 / 2e-105 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.010G197200 [exp] 277 / 2e-90 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.006G000300 [exp] 274 / 3e-89 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.011G070300 [exp] 273 / 7e-89 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.019G092500 [exp] 270 / 1e-87 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.008G061300 [exp] 268 / 6e-87 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10021023 pacid=23182295 polypeptide=Lus10021023 locus=Lus10021023.g ID=Lus10021023.BGIv1.0 annot-version=v1.0 ATGGATTCGAGCGGTACTCGAAATTTCCACAACCTGAGTGACCCGTCCGAGTCGGGTTTGCTACGATTCCGATCGGCTCCGAGCACCCTTTTCGCCGGGG ACGATTCAGCGCCCGTTACGGGTTTCAGGGAATTCGACATCAAATCCGCCGCCAAAGTGGAGGAGGCGGCGGCATCCGGGTACCCGAGTTCGACGCTGAC CCGGAGCTGCTCCGGTTTGCCGCCTCATTACCCGAAGCAGAATACGACGGCGGCGGCGGTGGCGGGTGTGGATAGGGACAGCTCATACGGCTTGTTGGCT CCGTTGGGAGCTGCGGCGGCGGCGGCGAAGACGGTTGACTATTCTGGTCTGGCTAGGCAGCGTAGCTCCCCGGCTGGGCTGTTCGTTGACCTTTCGGCTC CTCAAAATGGCCATTATGCTTCAATGAAGAGCTACAATAACAGCAGCAACAGATCAGAAGCCAGTCCACGACAGAGAAGTCCGCTCAGCTTCCTGTCAAG GAGCTCATCTTCCATGGCAATGCTATCATCGGAGCTCGAGCACGACCAGAGCGTGTCTCCTACTAGTTCGGACCCCACCAAGAACCTCGTCGATGGAAGA TTCTATGGTACTACTGATGCAGCACGGTTCCCTAGTTACGGGTCTTGGAACGAGTCGTCGTCCCAGTTTACGGACACGTTAACTGCTCAACATCATCATA GCCATCAGAGTGGAGGATCGCAGCTTGGGAGACTGTCGCACCACTTGAGCTTGCCCAAGAATGTTGGTAGCTGTGGTGGTGCTTCAGGGGAAATCATGGG AGCCGCCATTGACAAGTTTCTTCTGTTTCAGGACTCTGTTCCTTGTAAGATCAGAGCCAAGCGTGGATTCGCCACGCATCCTCGAAGCATTGCTGAACGA GTGAGAAGAACTAGGATTAGTGAAAGAATGAGGAAGCTGCAAGATCTCGTACCAAATATGGACAAGCAAACCAACACGGCTGACATGCTAGATTTGGCTG TCGACTACATTAAGGATCTCCAGACACAGTACAAGAAAATAGATTACGTATTCAAGGTCGTGTTGATCGGAGATTCAGCGGTAGGGAAATCACAATTGTT GGCGCGATTCGCCAGGAACGAGTTCAGCATCGATTCCAAGGCCACGATCGGGGTCGAGTTCCAGACGAAGACACTCAGCATCGATAACAAGACCGTCAAG GCCCAGATTTGGGACACCGCCGGCCAAGAAAGATGGAGACCTTTTGAGAAATCCTTCAGGTACAGGGCGGTAACGAGCGCGTACTATAGAGGGGCAGTGG GGGCGATGCTAGTGTACGACATGACAAAACGACAATCGTTCGACCACATGGCACGGTGGCTTGAAGAGCTCCGGGGGCACGCGGACAAGAACATCGTCAT CATGCTCATCGGAAACAAGTCCGACTTGGGGAGCCTGAGGGCGGTCCCGCAGGAGGACGCTCAGGAGTTCGCGCAGAGGGAGAACCTCTTCTTCATGGAG ACGTCGGCGTTGGAGTCGACCAACGTGGAGACGGCGTTCTTGACAGTTTTAACGGAGATATACCGGATCATAAGCAAGAAGACACTAACGGCCAACGACG AACTCGACTCGAATTCGGGGTTGTTGAAAGGTACAAGGATCATTGTGCCCGGTCAGGATACTGATTCCGGCAAGAGAGGCGGATGTTGTTGA
AA sequence Show only first row Show all	>Lus10021023 pacid=23182295 polypeptide=Lus10021023 locus=Lus10021023.g ID=Lus10021023.BGIv1.0 annot-version=v1.0 MDSSGTRNFHNLSDPSESGLLRFRSAPSTLFAGDDSAPVTGFREFDIKSAAKVEEAAASGYPSSTLTRSCSGLPPHYPKQNTTAAAVAGVDRDSSYGLLA PLGAAAAAAKTVDYSGLARQRSSPAGLFVDLSAPQNGHYASMKSYNNSSNRSEASPRQRSPLSFLSRSSSSMAMLSSELEHDQSVSPTSSDPTKNLVDGR FYGTTDAARFPSYGSWNESSSQFTDTLTAQHHHSHQSGGSQLGRLSHHLSLPKNVGSCGGASGEIMGAAIDKFLLFQDSVPCKIRAKRGFATHPRSIAER VRRTRISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQTQYKKIDYVFKVVLIGDSAVGKSQLLARFARNEFSIDSKATIGVEFQTKTLSIDNKTVK AQIWDTAGQERWRPFEKSFRYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKSDLGSLRAVPQEDAQEFAQRENLFFME TSALESTNVETAFLTVLTEIYRIISKKTLTANDELDSNSGLLKGTRIIVPGQDTDSGKRGGCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	0	1
AT2G26230			uricase / urate oxidase / nodu...		Lus10028868 [exp]	1.4	0.9684
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	1.7	0.9577
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	2.4	0.9542
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	2.8	0.9548
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026736 [exp]	4.7	0.9403
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	5.7	0.9511
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10021088 [exp]	5.8	0.9589
					Lus10027730 [exp]	6.3	0.9483
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	7.9	0.9512
AT5G59613			unknown protein		Lus10005899 [exp]	8.7	0.9438

Compare expression of checked genes

Lus10021023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.