Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22290 436 / 3e-153 Endoplasmic reticulum vesicle transporter protein (.1) AT1G36050 150 / 8e-42 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 148 / 6e-41 Endoplasmic reticulum vesicle transporter protein (.1.2) AT4G27080 87 / 1e-18 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 83 / 4e-17 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 79 / 8e-16 Thioredoxin protein with domain of unknown function (DUF1692) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027795 [exp] 484 / 4e-172 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 455 / 1e-160 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 379 / 2e-130 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036158 [exp] 160 / 1e-44 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036449 [exp] 155 / 3e-43 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10041121 [exp] 82 / 3e-17 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10043062 [exp] 81 / 2e-16 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10040029 [exp] 80 / 3e-16 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10011157 [exp] 80 / 6e-16 AT4G27080 718 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G022800 [exp] 461 / 3e-163 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 456 / 2e-161 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.005G168800 [exp] 160 / 2e-45 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G206100 [exp] 159 / 5e-45 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 155 / 2e-43 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 153 / 1e-42 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.011G135500 [exp] 83 / 3e-17 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 82 / 7e-17 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter
Representative CDS sequence Show only first row Show all	>Lus10021024 pacid=23182330 polypeptide=Lus10021024 locus=Lus10021024.g ID=Lus10021024.BGIv1.0 annot-version=v1.0 ATGGGGGTGAAGCAGGCGATAAAGAGCCTGGATGCTTTCCCTCGTGCAGAAGAACACTTGTTGCAGAAAACGCGTTCTGGAGCTCTTGTGTTGAGTGTGG ATGCTATTGACATGTCTGGAAAGCATGAAGTGGATCTCGATACAAACATATGGAAGCTTCGGCTAAACAGTCATGGCCAGATCATTGGCACTGAATATTT GTCAGACCTTGTTGAAAAGGAACACAGTCACAATCATGATGATAAAGATCACCAACATGATACTGAGCGGAAACTTCACAGTCATGGCTTTGATGAAGAT GCTGAAAATATGATAAAGAAGGTGAAACTAGCAATGACAAATGGAGAAGGATGCCGGGTCTATGGTGTTTTAGATGTTCAAAGGGTTGCCGGAAACTTCC ACATTTCAGTTCATGGGCTGAATATTTTGGTTGCTCAAATGATTTTTGAAGGGGCTAAGCATGTCAATGTAAGCCACATCGTTCATGATCTATCATTTGG GCCAAAATATCCTGGCATTCACAACCCTCTTGATGGGACATCGAGGATTCTACGTGATTCAAGTGGAATATTCAAATACTATATCAAGATTGTTCCAACG GAGTACAGGTACATCTCCAAGGAAGTGTTACCAACTAACCAATTCTCAGTTACGGAATACTTTTCACCAATGAACGACTTCGATAGGTCGTGGCCAGCTG TTTACTTTTTGTATGATTTGTCACCCATCACTGTCACGATCAAGGAAGAAAAGCGCAGTTTCTCCCATTTCATCACTCGGCTTTGTGCAGTTTTAGGAGG TACATTTGCTGTAACAGGAAAAGAAAGGGTAGTCAGTCCCGCAACACATGCGAATCATCTCACCGGACTCGGCAAGGTGGCGACGGTGTCTCTCTGCATT CTTGAGCAACCGTTCACAGACGACAAGCCGGAGGAATTGTCTAACCCGCTGAGTGCCTTCCCATCGCGAAATCGTATATCCAAGGTTTCTATACATGACC ACCTCCACCTCATCGGCAAAGTCTTCTTGAAATCCTTCCAGGGCCTGGCCCAAACATACGGCCCACTCATCGGATTCATATTGGCTTTGCTTGAAAACAT TTTGATGAAGTGTAGGAGGAAGTGA
AA sequence Show only first row Show all	>Lus10021024 pacid=23182330 polypeptide=Lus10021024 locus=Lus10021024.g ID=Lus10021024.BGIv1.0 annot-version=v1.0 MGVKQAIKSLDAFPRAEEHLLQKTRSGALVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGQIIGTEYLSDLVEKEHSHNHDDKDHQHDTERKLHSHGFDED AENMIKKVKLAMTNGEGCRVYGVLDVQRVAGNFHISVHGLNILVAQMIFEGAKHVNVSHIVHDLSFGPKYPGIHNPLDGTSRILRDSSGIFKYYIKIVPT EYRYISKEVLPTNQFSVTEYFSPMNDFDRSWPAVYFLYDLSPITVTIKEEKRSFSHFITRLCAVLGGTFAVTGKERVVSPATHANHLTGLGKVATVSLCI LEQPFTDDKPEELSNPLSAFPSRNRISKVSIHDHLHLIGKVFLKSFQGLAQTYGPLIGFILALLENILMKCRRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10021024 [exp]	0	1
AT4G33380			unknown protein		Lus10009765 [exp]	10.7	0.8334
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10002788 [exp]	11.4	0.8159
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	15.6	0.8349
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10012240 [exp]	28.5	0.7451
					Lus10005096 [exp]	29.6	0.8246
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	36.1	0.8084
AT5G46060			Protein of unknown function, D...		Lus10000133 [exp]	36.9	0.7839
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10028719 [exp]	44.4	0.8102
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021320 [exp]	56.8	0.8019
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10043349 [exp]	67.8	0.7719

Compare expression of checked genes

Lus10021024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.