Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52790 216 / 2e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52820 206 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 185 / 4e-56 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 183 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 177 / 3e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 139 / 1e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 126 / 3e-34 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 91 / 6e-21 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G14130 88 / 9e-20 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005776 [exp] 333 / 2e-114 AT1G52790 198 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005773 [exp] 323 / 2e-110 AT1G52790 205 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005774 [exp] 241 / 4e-79 AT1G52790 144 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 197 / 4e-61 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023024 [exp] 184 / 1e-55 AT1G52820 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027419 [exp] 147 / 6e-44 AT1G52800 89 / 4e-22 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041281 [exp] 150 / 7e-44 AT1G52790 298 / 5e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 150 / 3e-42 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008097 [exp] 144 / 1e-40 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176500 [exp] 220 / 7e-70 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 217 / 7e-69 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 216 / 2e-68 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 176 / 6e-53 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 176 / 9e-53 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 172 / 1e-50 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 162 / 1e-47 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 160 / 8e-47 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G159500 [exp] 100 / 3e-24 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G106900 [exp] 95 / 3e-22 AT4G23340 392 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10021025 pacid=23182311 polypeptide=Lus10021025 locus=Lus10021025.g ID=Lus10021025.BGIv1.0 annot-version=v1.0 ATGGGGCACGCTACTATTCCGGTGATAGATCTCTCGAGTCTTGTGAAGCCGGAAACTGAGTCATGGGTTTCTACTCGGGCCGCGGTCAAATCGGCCATGG AAGAGTACGGCTGTTTCCAGGCTACATACGACGTCGTCGTCGACCGAGAGGAGGTCGACAGTACTCCGATATTCAAGGCGATAGAAGAGCTGTTCGATCT TCCCGAGGAGATTAAAATCCAAAACACCAGCACCAAGCCACTTTTCGGAAGCTCGGTGAGGAGCGATGCCAACCCGCTCTTCGAGACGCTTGCGATCGAT AACCCGACTAGCGTCGAGGCCACTCGGAGCTTCACCAACCTCATGTGGCCGGCTGCCGGAAATGATGGCTTTAGCAAGACAAGTCTTTCAATATCAAAAA GAATGGCGGAGCTACATGACAAGGTATTGAAGATGGTGAAGGAGAGCTACAACGTGGAGTTGGGGTTTCCAGACGATTCCATGAATTACTTACTTCGGTA CTTGAAGTATCACACGCCACCGCTGAACCACTCCGACGTTGGTCTCCGTGCTCACTCCGACAAATCTTTTATTTCAGTCATCCATCAGAACCATCTCAAC GGCCTGCAGATCCAACTTCCTGACGAGACACAGAGATGGGTTGACGTTGACCTTACGTCACCGCCGGCCGGGTCCTTCTTTGTTCTCGCCGGAGATGTTC TCGTGGCATGGAGTAACGAAAGAATACGAAGCTGTGTGCACCGAGTGATAGTGCAAAGGGAGAAAGAAGACAGTAGGTATTGTGTGACACTGTTTAGTTA TGTGGAGAGGGGGATCGAGATCCAGTCACCCGATGAGTTCGTGGACGAAGCTCATCCGTCGAAATACAGACCGTTCGATAACTTAGGATATCTTGATGAG GTCCTAAAGAGCGTGATGATGAATCAGCCTATACTTACCATCAAGGACTACTGTGGGTTATAA
AA sequence Show only first row Show all	>Lus10021025 pacid=23182311 polypeptide=Lus10021025 locus=Lus10021025.g ID=Lus10021025.BGIv1.0 annot-version=v1.0 MGHATIPVIDLSSLVKPETESWVSTRAAVKSAMEEYGCFQATYDVVVDREEVDSTPIFKAIEELFDLPEEIKIQNTSTKPLFGSSVRSDANPLFETLAID NPTSVEATRSFTNLMWPAAGNDGFSKTSLSISKRMAELHDKVLKMVKESYNVELGFPDDSMNYLLRYLKYHTPPLNHSDVGLRAHSDKSFISVIHQNHLN GLQIQLPDETQRWVDVDLTSPPAGSFFVLAGDVLVAWSNERIRSCVHRVIVQREKEDSRYCVTLFSYVERGIEIQSPDEFVDEAHPSKYRPFDNLGYLDE VLKSVMMNQPILTIKDYCGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10021025 [exp]	0	1
AT3G01860			unknown protein		Lus10041572 [exp]	7.2	0.8078
AT2G25625			unknown protein		Lus10008096 [exp]	12.2	0.7811
AT2G25625			unknown protein		Lus10013129 [exp]	21.3	0.7857
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10029464 [exp]	22.4	0.7253
AT1G01490			Heavy metal transport/detoxifi...		Lus10024670 [exp]	24.4	0.7728
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10016546 [exp]	28.7	0.7655
AT5G61340			unknown protein		Lus10003483 [exp]	29.4	0.7437
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10018598 [exp]	30.6	0.7721
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	34.3	0.6653
					Lus10029617 [exp]	36.4	0.7508

Compare expression of checked genes

Lus10021025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.