Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12150 393 / 3e-137 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023826 [exp] 482 / 3e-172 AT3G12150 577 / 0.0 unknown protein Lus10027799 [exp] 402 / 2e-140 AT3G12150 556 / 0.0 unknown protein Lus10035501 [exp] 239 / 2e-75 AT3G12150 333 / 3e-111 unknown protein Lus10027494 [exp] 44 / 6e-06 ND 34 / 0.006 Lus10009101 [exp] 42 / 4e-05 ND 35 / 0.003 Lus10005297 [exp] 39 / 0.0007 ND 40 / 5e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058400 [exp] 396 / 1e-138 AT3G12150 623 / 0.0 unknown protein Potri.016G049700 [exp] 393 / 2e-137 AT3G12150 615 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF09752 [flax] [poplar] DUF2048 Abhydrolase domain containing 18
Representative CDS sequence Show only first row Show all	>Lus10021026 pacid=23182291 polypeptide=Lus10021026 locus=Lus10021026.g ID=Lus10021026.BGIv1.0 annot-version=v1.0 ATGGCGATGATGGCGATGGAGGTCGTGCATGCTTGGGAGATGGCACAACAACGGAATAGGAGGGGAGTTCAGGTGGAGCCGATGATAGATTGTGGAGATG GCATCCACCCTCTAACCATGAAGTTAAATGACAGTTTGGAGTTTGATGATATCATTGGGCGTTGTCGGGATATTTTTGCTTCTAAACCGAATTATACGGT TAGTTTTGTGCGGAGGGATTGGACTGGGGATCATACCTATGAGCGCCGGCTGCGCCTTGCTGGACCATTGCTGAAGGAGAACATTGCTACCATGGTACTA GAAAGCCCTTTCTATGGACAAAGGCGCCCGATGCTGCAGCAAGGTGCCAAGCTCTTATGCGTCAGCGACTTGCTTCTTTTGGGTAGGGCGACAATTGAGG AAGCACGTAGTCTCCTACACTGGTTAGACTACGAAGCAGGTTTCGGCAAGCTTGGTATTTGTGGTCTTAGTATGGGTGGCGTCCACGCTGCGATGGTTGG ATCGTTGCACCCAACACCTGTTGCAACTCTCCCTTTCCTTTCTCCACACTCTGCCGTTGTGGCATTCTGCGAGGGCATACTACAACACGGCACTGCTTGG GAGGCCCTGAGAGATGACCTTCTCGCGGAACAAAAGGATTCAATGACGCTCGAGGAAGTTAGAGCACGAATGCGCAATGTGCTCTCTCTCACAGACGTCA CACGATTTCCAGTCCCAAAGAGTCCGAACGCAGTTATTTTTGTCGCTGCAACTGATGATGGCTATGTCCCCAACTATTCGGCTTTGGAGCTGCAGAAGGC TTGGCCTGGATCAGAGGTGAGGTGGGTTAAAGGTGGGCATGTTTCGTCGTTCATCCTTCACAACAGTGAGTTTCGGAGAGCGATTAAAGACGGGCTTGAC AGATTAGAATGGAAAGAATCTACATTGTGCTGA
AA sequence Show only first row Show all	>Lus10021026 pacid=23182291 polypeptide=Lus10021026 locus=Lus10021026.g ID=Lus10021026.BGIv1.0 annot-version=v1.0 MAMMAMEVVHAWEMAQQRNRRGVQVEPMIDCGDGIHPLTMKLNDSLEFDDIIGRCRDIFASKPNYTVSFVRRDWTGDHTYERRLRLAGPLLKENIATMVL ESPFYGQRRPMLQQGAKLLCVSDLLLLGRATIEEARSLLHWLDYEAGFGKLGICGLSMGGVHAAMVGSLHPTPVATLPFLSPHSAVVAFCEGILQHGTAW EALRDDLLAEQKDSMTLEEVRARMRNVLSLTDVTRFPVPKSPNAVIFVAATDDGYVPNYSALELQKAWPGSEVRWVKGGHVSSFILHNSEFRRAIKDGLD RLEWKESTLC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12150			unknown protein		Lus10021026 [exp]	0	1
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	12.0	0.6798
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	12.1	0.7247
AT1G15780			unknown protein		Lus10025449 [exp]	19.0	0.6052
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	21.4	0.6492
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	25.7	0.6823
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	31.6	0.6637
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	33.3	0.6813
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023057 [exp]	53.4	0.6570
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	57.1	0.6264
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	65.4	0.6714

Compare expression of checked genes

Lus10021026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.