Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15930 191 / 1e-63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT2G32060 191 / 1e-63 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027800 [exp] 231 / 2e-79 AT2G32060 197 / 3e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10023825 [exp] 214 / 2e-71 AT2G32060 168 / 3e-53 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10035501 [exp] 220 / 5e-71 AT3G12150 333 / 3e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G056200 [exp] 225 / 5e-77 AT2G32060 201 / 9e-68 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.005G206300 [exp] 224 / 2e-76 AT2G32060 201 / 2e-67 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.001G046600 [exp] 212 / 7e-72 AT2G32060 194 / 8e-65 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.003G181200 [exp] 211 / 1e-71 AT2G32060 188 / 1e-62 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10021027 pacid=23182387 polypeptide=Lus10021027 locus=Lus10021027.g ID=Lus10021027.BGIv1.0 annot-version=v1.0 ATGTCAGGTGAAGAGGTTGCTGTTCAACAGCCAGAGGCTGCCCCTGCCGCTGCCCCAGCAGCTGCTTTGGGTGAGCCGATGGACTTGATGACTGCGTTGC AGCTTGTTCTGAGGAAGGCACTTGCTCACGGTGGTCTTGTAAAAGGGCTTCACGAAGGTGCTAAAGTGATCGAGAAGCACACTGCTCAGCTTTGTGTATT GGCAGAGGACTGCAACCAGGCTGACTATGTTAAGTTGGTGAAAGCTCTCTGTGCTGATCACAATGTTAACTTGATGACTGTTCCCAGCGCCAAGACCCTC GGTGAATGGGCAGGGCTATGCAAGATCGATTCGGAAGGGAAAGCGAGGAAGGTTGTGGGAGCCTCCATGGTCGTTGTTAAGGATTTCGGTGAGGAAAGTG AAGGACTTAACATTGTCCAAGAACATCTGAAATCTCAATAG
AA sequence Show only first row Show all	>Lus10021027 pacid=23182387 polypeptide=Lus10021027 locus=Lus10021027.g ID=Lus10021027.BGIv1.0 annot-version=v1.0 MSGEEVAVQQPEAAPAAAPAAALGEPMDLMTALQLVLRKALAHGGLVKGLHEGAKVIEKHTAQLCVLAEDCNQADYVKLVKALCADHNVNLMTVPSAKTL GEWAGLCKIDSEGKARKVVGASMVVVKDFGEESEGLNIVQEHLKSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10021027 [exp]	0	1
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	1.0	0.9066
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10016453 [exp]	3.0	0.8972
AT4G15000			Ribosomal L27e protein family ...		Lus10003814 [exp]	6.6	0.9044
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	9.2	0.8551
AT4G25740			RNA binding Plectin/S10 domain...		Lus10039282 [exp]	9.5	0.8673
AT5G59850			Ribosomal protein S8 family pr...		Lus10023429 [exp]	16.6	0.8820
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10014604 [exp]	18.8	0.8743
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10042553 [exp]	19.9	0.8444
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10009322 [exp]	19.9	0.8369
AT3G06040			Ribosomal protein L12/ ATP-dep...		Lus10031756 [exp]	21.0	0.8391

Compare expression of checked genes

Lus10021027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.