Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06860 347 / 2e-119 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 (.1) AT5G06870 320 / 9e-109 PGIP2, ATPGIP2 ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, polygalacturonase inhibiting protein 2 (.1) AT3G12145 290 / 3e-97 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT3G12610 170 / 9e-50 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G20820 146 / 1e-40 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 144 / 4e-40 Leucine-rich repeat (LRR) family protein (.1) AT5G44700 122 / 1e-30 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G33670 119 / 6e-30 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 118 / 2e-29 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 117 / 3e-29 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023824 [exp] 582 / 0 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10021029 [exp] 529 / 0 AT5G06860 325 / 4e-111 polygalacturonase inhibiting protein 1 (.1) Lus10023825 [exp] 208 / 5e-66 AT2G32060 168 / 3e-53 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10031824 [exp] 165 / 1e-47 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 156 / 2e-44 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 150 / 5e-42 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 144 / 4e-40 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 144 / 7e-40 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 121 / 4e-32 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058600 [exp] 402 / 5e-141 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1) Potri.016G049400 [exp] 386 / 8e-135 AT5G06860 372 / 2e-129 polygalacturonase inhibiting protein 1 (.1) Potri.016G049600 [exp] 366 / 6e-127 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.006G058500 [exp] 234 / 3e-76 AT5G06860 258 / 2e-85 polygalacturonase inhibiting protein 1 (.1) Potri.009G064300 [exp] 153 / 2e-43 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 144 / 5e-40 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 142 / 3e-39 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 137 / 3e-37 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 129 / 5e-33 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.008G007866 [exp] 123 / 7e-31 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021028 pacid=23182420 polypeptide=Lus10021028 locus=Lus10021028.g ID=Lus10021028.BGIv1.0 annot-version=v1.0 ATGAGAGGAATCGGAACCGGAATCCTTACCTTCTGCAGGCTCTTCCTCGCCGCCGCACTACTTCCGATCACCTTTTCCAAAACCGAACGATGTAACCCAC AAGACAAAGCAGCGCTCTTCAACATCAAGGAAAGCCTCGGCAACCCTTACCTCTTAGCCTCATGGACTCGTGACTCCGACTGCTGCACCAGCTGGTACCA AGTCGAATGCGACCGGACCACCAACCGGATCACTTCCCTCACCATCTTCGCCGGCGAACTCTCCGGCCAGATCCCTCCCGCAGTGGGGGACCTCCCTTTC CTCGAAACGCTCGTCTTCCGCAAGCTCACCAACGTCACCGGTACAGTCCAGCCGGCGATCGCCAAACTCAAACGACTCACGTTCCTCCGGCTCGACCATT TAAATCTAACTGGTTCAGTCCCTGGTTGGCTTGGCCAGCTCAAGACACTGACCTTACTCGACCTCTCGTTCAACTCGTTCACCGGCTCGATCCCGGCGGA GCTTGCTAACTTGCCCAATCTGGAGTCGCTCTACTTAGATAGGAACAAGCTTACCGGACGGATCCCGGACTCGTTCGGAAAATTCTTGAAGTTCCCGTCG CTGTCCCTCTCGCACAATCAGTTGTCCGGCGAGATCCCGGCGTCGATGGAGAATTACAACACTGATTACTCAATCGATCTGTCGAGGAACCGATTAGAAG GCGACGCTTCGCTGTTGTTCGGCGGTGACAAGAGCGTGCTGTTCGTGGATATATCGAGGAATCTGTTCGAGTTCGATTTCGGGAAAGTGGCGGCGTTTCC TCCGAACATGACGAATTTGGATGTGAATCATAACAAGATCTACGGGAAGATTCCGGCGGGGTTGGTGAAGCTGGATCTGCAGTTTTTTAATGCCAGCTAT AATCGGTTGTGTGGGGAGATTCCCGCTGGCGGGAAGTTGCAGAGCTTCGATTCCACGGCTTATTTCCATAACCGGTGCCTGTGTGGAAGCCCGCTTGAGC CCTGCAAGTGA
AA sequence Show only first row Show all	>Lus10021028 pacid=23182420 polypeptide=Lus10021028 locus=Lus10021028.g ID=Lus10021028.BGIv1.0 annot-version=v1.0 MRGIGTGILTFCRLFLAAALLPITFSKTERCNPQDKAALFNIKESLGNPYLLASWTRDSDCCTSWYQVECDRTTNRITSLTIFAGELSGQIPPAVGDLPF LETLVFRKLTNVTGTVQPAIAKLKRLTFLRLDHLNLTGSVPGWLGQLKTLTLLDLSFNSFTGSIPAELANLPNLESLYLDRNKLTGRIPDSFGKFLKFPS LSLSHNQLSGEIPASMENYNTDYSIDLSRNRLEGDASLLFGGDKSVLFVDISRNLFEFDFGKVAAFPPNMTNLDVNHNKIYGKIPAGLVKLDLQFFNASY NRLCGEIPAGGKLQSFDSTAYFHNRCLCGSPLEPCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021028 [exp]	0	1
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	2.8	0.9779
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	3.2	0.9717
					Lus10027376 [exp]	4.9	0.9754
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	6.9	0.9733
					Lus10031841 [exp]	9.4	0.9698
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	10.4	0.9715
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	11.3	0.9731
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	18.7	0.9698
AT1G63810			unknown protein		Lus10014305 [exp]	20.0	0.9636
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	20.8	0.9682

Compare expression of checked genes

Lus10021028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.