Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57890 710 / 0 Tubulin binding cofactor C domain-containing protein (.1.2) AT2G42230 684 / 0 C-CAP/cofactor C-like domain-containing protein (.1.2) AT5G06839 105 / 4e-24 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G68640 99 / 8e-22 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT3G12250 92 / 4e-20 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 92 / 5e-20 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G08320 89 / 9e-19 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06960 86 / 7e-18 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G65210 81 / 3e-16 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G77920 79 / 1e-15 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023821 [exp] 896 / 0 AT3G57890 875 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10012025 [exp] 805 / 0 AT3G57890 835 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10016279 [exp] 774 / 0 AT3G57890 747 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10023822 [exp] 179 / 1e-48 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10027802 [exp] 132 / 9e-36 AT5G06839 208 / 1e-66 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10035499 [exp] 131 / 5e-33 AT5G06839 377 / 1e-129 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10026166 [exp] 102 / 3e-23 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 101 / 3e-23 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10000025 [exp] 96 / 3e-23 AT5G06950 199 / 2e-64 bZIP transcription factor family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049000 [exp] 764 / 0 AT3G57890 852 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Potri.006G059100 [exp] 753 / 0 AT3G57890 876 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Potri.006G058800 [exp] 132 / 1e-32 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 128 / 4e-31 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.008G118300 [exp] 104 / 2e-23 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.016G036500 [exp] 100 / 5e-22 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 100 / 6e-22 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 100 / 8e-22 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.001G029800 [exp] 97 / 7e-21 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.004G203400 [exp] 86 / 2e-17 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [flax] [poplar] CAP_C-like PF07986 [flax] [poplar] TBCC Tubulin binding cofactor C CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10021031 pacid=23182394 polypeptide=Lus10021031 locus=Lus10021031.g ID=Lus10021031.BGIv1.0 annot-version=v1.0 ATGTATCTAGATGGACAACAGCAACAACAGCAGAATGATCCAACTGTTCATATTCTTCCACATCACAATCAACAAGGAGGTATGATGAGCAGCAGTACTA GTACCAGTACCAGGCCACCTCCAACTCTCAACATCTTCCCTTCCCACCCCATGTACACCAAGATCAATAATGGTACTAGTACCGGCTCTCCGCCACCTCA TCATCATCATCATCATGGAGTAGGTGTCTCCTCCGTCGGCGCCGCCACGTCCACTGCCGGTCCCAAGAGACCGTCCTCCTCCTCCTCCCCCTCGCCGTCA ACTTATCCCACCGTTGCTCCGCCTTCCACATCCCAACCCGCAGCCAAATCTATCAAGAGGGAAGGGATGAATCGGAAAGGTGCGAATAATGGTGGTGCAT CAAATACAGAGCATCAAGGTCCCAAGACGCCTGACCCTAAGGTATTTTTGGTTGTGTTGTCTCGATCAATGATATTGTTGGGTTTTCGTGCTCATCCCCA GACATTGAGGCGACTTGCTCAGAATAGAGAAGCAGCCAGGAAAAGCAGGCTCCGCAAAAAGGCTTATGTTCAGCAGCTGGAGTCAAGTAGAATCAAGCTT TCTCAGCTTGAGCAAGAGCTCAATAGAGCTCGATCTCAGATAATAGCGAACCAGATAGAGCCGTTGACGGAGCAGCAGATAATGGGGATATGCGGGATGC AGCAGTCGACGCAGGAAGCCGAGGAAGCGCTGTCGCAGGGCGTGGAAGCGCTGAACCAGTCGTTGTCGGAGACGATTGCGGCGGACTCGTTGAGCTGCCA ACCGAACATGGCTAACTACATGGGACAGATGGCCATGGCCATCAACAAGCTCTCCACCTTCGAAGCCTTTGTCCGACAGAAGCTGTTGCCTCGGACGCAT AAGGATTCTGCTGCCGTTGCCGATGTTTGGCCTTCTACTTCAGCTTTCGACGGTTACTTGTCCGCTCTTTCTCCGCTCCAGCTTGTACGTAGCAACAGCC GTCGTTTCATGCCATCGCATGCTGACGAAGAAGCTCATCAGTTATCCTATTTACAAAAGCACATGGGTAACATTCTTTCTCTGCTGGCAGAACCCGTTGA AGGAGATGGAGAAGGCGAAAGCGAAGAGTCCCTGGTTTTGACCATGGAGGGATTTGAGCACCTTGGATTTCTTATTCAGATTGGTGAACAGGGATCAGAA AGAGTTTCTTTAAGTCAAGCTACCCCATTCTTTGCCAATTCGGATCCTGACATGCCAGCTGTTCCTGTCCCTGCTTCTGAAGTTCTTGATTGGATAACAG AAAATATTTCCTCTGCATTGGAGACCATAACTGAAAGAATTTCTGCTAAAGAGAATGGTCCATCCAGTGCATCTGATCAAGATATAGCGATGGCTGATAC CTGCAATGACACTGTGAAAACATCACCTAGTTCTAGAGGCACAAGCTTCATTGAGGGTGTCTCTAAATCATCATGTGTGAAACAGACATCAGATCTTAAA GGCTCCTCATTAAAGGTTCTAAATTGTCATGAATCCTCTATTTACATCCTAGCACCGTTGAGATATGCCACAGTGTACGGATGCTCTGATTCTACAATCG TTCTTGGAGCTGTGGGAAAGGCTGTAAGGATTGAACATTGTGAGCGAGTTCATGTGATAACAGCTGCAAGAAGAGTATGCATTGCCAATTGTCGAGAGTG TGTGTTCTTTCTCGGGGTTAACCAGCGGCCACTTATGGTTGGTGATAACCATAAGCTCCATGTGGCACCATACAATACATTTTACTCTGATTTGGAAGCA CACATGGCTGAAGCTGGTGTTGAAGCAAGCATCAACAAGTGGGATGAACCTCTCGCCTTAGGAGTGGTTGATCCCCACGATTCATTATCACACCCAGCTG GCGTCTCTGATGTTCAAGCTGAGACAGCCACACGGATAGACCCCGACCATTTCACAAACTTTCTGATTCCCAACTGGTTTGGAGGCGAATCATCAGGGAT GACAAAAGATAATCCCTTCTCGTTGCCAGACAGCTATATGGAATCCCATGTGAAAAATCTAAAAAACTTGGATGAGATCAAACAACTATTGAGGGAAACT CCACTTGAAGAAAGCAGGAAGCGGGAACTTTCATGTGCACTCCACACGCTGTTCAAAGATTGGTTGTATGCTTCAGGCAACATCCGTCAACTATACTGCC TACAAGGTGATTAA
AA sequence Show only first row Show all	>Lus10021031 pacid=23182394 polypeptide=Lus10021031 locus=Lus10021031.g ID=Lus10021031.BGIv1.0 annot-version=v1.0 MYLDGQQQQQQNDPTVHILPHHNQQGGMMSSSTSTSTRPPPTLNIFPSHPMYTKINNGTSTGSPPPHHHHHHGVGVSSVGAATSTAGPKRPSSSSSPSPS TYPTVAPPSTSQPAAKSIKREGMNRKGANNGGASNTEHQGPKTPDPKVFLVVLSRSMILLGFRAHPQTLRRLAQNREAARKSRLRKKAYVQQLESSRIKL SQLEQELNRARSQIIANQIEPLTEQQIMGICGMQQSTQEAEEALSQGVEALNQSLSETIAADSLSCQPNMANYMGQMAMAINKLSTFEAFVRQKLLPRTH KDSAAVADVWPSTSAFDGYLSALSPLQLVRSNSRRFMPSHADEEAHQLSYLQKHMGNILSLLAEPVEGDGEGESEESLVLTMEGFEHLGFLIQIGEQGSE RVSLSQATPFFANSDPDMPAVPVPASEVLDWITENISSALETITERISAKENGPSSASDQDIAMADTCNDTVKTSPSSRGTSFIEGVSKSSCVKQTSDLK GSSLKVLNCHESSIYILAPLRYATVYGCSDSTIVLGAVGKAVRIEHCERVHVITAARRVCIANCRECVFFLGVNQRPLMVGDNHKLHVAPYNTFYSDLEA HMAEAGVEASINKWDEPLALGVVDPHDSLSHPAGVSDVQAETATRIDPDHFTNFLIPNWFGGESSGMTKDNPFSLPDSYMESHVKNLKNLDEIKQLLRET PLEESRKRELSCALHTLFKDWLYASGNIRQLYCLQGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	0	1
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	3.0	0.8968
AT3G18860			transducin family protein / WD...		Lus10011296 [exp]	6.0	0.8454
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	6.9	0.8393
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	8.1	0.8414
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	8.3	0.8262
AT5G59830			unknown protein		Lus10025307 [exp]	11.7	0.8335
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	13.3	0.8818
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	17.3	0.8617
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002074 [exp]	17.6	0.8726
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	18.2	0.8263

Compare expression of checked genes

Lus10021031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.