Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42220 305 / 6e-106 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT3G08920 111 / 7e-30 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G24750 83 / 1e-18 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G27700 53 / 3e-08 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G17850 47 / 2e-06 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66040 45 / 3e-06 STR16 sulfurtransferase protein 16 (.1.2) AT5G66170 45 / 4e-06 STR18 sulfurtransferase 18 (.1.2.3) AT2G21045 40 / 0.0003 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G35770 40 / 0.0004 ATSEN1, DIN1, SEN1 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023820 [exp] 467 / 2e-169 AT2G42220 302 / 1e-104 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10004811 [exp] 95 / 2e-23 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10002485 [exp] 94 / 3e-23 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10043306 [exp] 89 / 1e-20 AT4G24750 389 / 3e-137 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10019454 [exp] 88 / 2e-20 AT4G24750 390 / 2e-137 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10012566 [exp] 54 / 4e-09 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10005635 [exp] 54 / 9e-09 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10023243 [exp] 49 / 1e-06 AT4G27700 305 / 7e-106 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10028390 [exp] 47 / 3e-06 AT4G35770 182 / 3e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059200 [exp] 354 / 3e-125 AT2G42220 318 / 4e-111 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G100600 [exp] 97 / 2e-24 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G086100 [exp] 84 / 3e-19 AT4G24750 416 / 1e-147 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G111200 [exp] 53 / 9e-09 AT2G17850 162 / 5e-52 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 48 / 5e-07 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G106400 [exp] 45 / 2e-05 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.012G020700 [exp] 44 / 3e-05 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 44 / 3e-05 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10021032 pacid=23182288 polypeptide=Lus10021032 locus=Lus10021032.g ID=Lus10021032.BGIv1.0 annot-version=v1.0 ATGGCTGGTCTTGCTGCTTCTTGTTCCACCCTTTCTTCCAGAAGAAATTTTGCGGCATCTTGGTTGGAATTCCAGGCTGACGGAGATCATCAACACGGAA GAACGCGATGGAGACAGATTCCTCGATGTGTAAAGACGTTTGGGATAAGAGCTGAGGTGAATTATGTGAGGGCGGAGGAAGCCAAAAAGCTGATAGCAGA AGAAGGGTATGCAGTAGTTGATGTGAGGGACGTGAGACAATTCGAGCGAGCGCATATCAAATCGTGCTACCATGTTCCTCTCTTCATCGAAAACAAAGAC AACGACATTGGGACCATCATTAATAGGCAACTGCACAACAACTTCTCCGGGTTGTTCTATGGGCTGCCTTTCACTAAGCCAAATCCTGAGTTTGTAGAGT CGGTGAAGAGCAAGTTCTCGCCCGAAAGCAAACTGTTGGTGGTGTGCCAGGAAGGACTGAGGTCTGCCGCAGCAGCTGACAAGCTAGAGAAAGCCGGTTT CCAGAACATTGCATGCATAACATCTGGTCTCCAATCTGTTAAACCAGGTACATTCGATTCCGAAGGCAAAACCGAGTTACAAAATGCTGGCAAAGCCGGT TTGGTCACAGTTCAAGGCAAGATCTCCGCTGTCGTTGGAACCATTCTCGTCTGCGCACTTCTATTCATTACGATCTTTCCTGATCAAGCGGAGCAGCTGT TAGCACTAGTACCATCTAGCTAG
AA sequence Show only first row Show all	>Lus10021032 pacid=23182288 polypeptide=Lus10021032 locus=Lus10021032.g ID=Lus10021032.BGIv1.0 annot-version=v1.0 MAGLAASCSTLSSRRNFAASWLEFQADGDHQHGRTRWRQIPRCVKTFGIRAEVNYVRAEEAKKLIAEEGYAVVDVRDVRQFERAHIKSCYHVPLFIENKD NDIGTIINRQLHNNFSGLFYGLPFTKPNPEFVESVKSKFSPESKLLVVCQEGLRSAAAADKLEKAGFQNIACITSGLQSVKPGTFDSEGKTELQNAGKAG LVTVQGKISAVVGTILVCALLFITIFPDQAEQLLALVPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	0	1
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	2.2	0.9850
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	2.6	0.9668
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	3.5	0.9806
AT2G42220			Rhodanese/Cell cycle control p...		Lus10023820 [exp]	4.5	0.9765
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	5.2	0.9766
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10041966 [exp]	5.7	0.9663
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	6.3	0.9504
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	6.5	0.9570
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	7.4	0.9747
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	8.1	0.9673

Compare expression of checked genes

Lus10021032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.