Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57910 211 / 1e-67 D111/G-patch domain-containing protein (.1) AT5G26610 47 / 5e-06 D111/G-patch domain-containing protein (.1.2.3) AT3G54230 44 / 8e-05 SUA suppressor of abi3-5 (.1.2) AT5G08535 39 / 0.0009 D111/G-patch domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023819 [exp] 393 / 1e-138 AT3G57910 273 / 1e-91 D111/G-patch domain-containing protein (.1) Lus10031446 [exp] 48 / 4e-06 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 46 / 1e-05 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10010955 [exp] 46 / 2e-05 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10031369 [exp] 45 / 5e-05 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048600 [exp] 244 / 2e-80 AT3G57910 215 / 1e-69 D111/G-patch domain-containing protein (.1) Potri.005G002700 [exp] 47 / 9e-06 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.013G002100 [exp] 46 / 2e-05 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.008G003100 [exp] 44 / 2e-05 AT5G08535 107 / 5e-31 D111/G-patch domain-containing protein (.1.2) Potri.004G081800 [exp] 45 / 7e-05 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10021033 pacid=23182346 polypeptide=Lus10021033 locus=Lus10021033.g ID=Lus10021033.BGIv1.0 annot-version=v1.0 ATGGCGGAATCACCCGAAAACAGACCCGCCGGCCTGGGATCCGCCGGACGAGGAGAAGATAAAGAGGAAGAAGAAGATTACATGGGAGAACTTTCTCAGT TTCTTCTTCCGGAGACATCGGTCCCGTCCAATCCCAAGATCTCAAGCAAAAAGATTGCTAATAACAAGTTGCAAGCAGTGCAATCATCGAAGAAGAAAAA GGCTGTAAGTTGGCACGAGCAACGCAGGCTTGAGAAGGAAAGACAGCAAAAAGAGGAGGATGAGCAAACACTGGCTAGAATTGAAGCTCCGATTCCACAG TCTAACATTGGGTTTAAGCTGTTGAAGCAAATGGGATACACTCCTGGTTCGGCACTTGGTAAAGAGGGTTCAGGGAGAGCTGAGCCTGTGGGGATTGAGA TAAGGCGGACTAGAGTGGGGATTGGGAGGGAAGATCCACATAAGGAGAAGAGGAAAAGAGAAGAGTTTGAGGCTGAATGGAAGAAGAGGAATGACGAGGC GATGATGGCTGACTTTGGTTCGAGGCAGAAGTTGCAATGGCGGAGTAAGAGAGTGGTTGTGAATTTTACGAAAGCCAAGGCTGCTCTTGATCAGTTGGAG AATAAAGAGTTTGTTGAGCCTAAGAAGAGTGAGGATGAGGAAGAAGGTGAACAGGAAGAGGAAGAGGAAGAAGTTGTGACAGAAGAGGATCTGCACCAGA TATTGATGAAACTTAGAGACGAACATCGGTACTGCTTATTTTGTGGATTTCAGTTGGTTACCACTCAGTTGCATCCAGTACCTGATTGTTTAGTGCATGA ACTTGTTACTATGTTTCAGTATGAGACAGCAGAAGCACTTTTATCCAACTGCCCTGGAATCGATGAAGATGACCACTAA
AA sequence Show only first row Show all	>Lus10021033 pacid=23182346 polypeptide=Lus10021033 locus=Lus10021033.g ID=Lus10021033.BGIv1.0 annot-version=v1.0 MAESPENRPAGLGSAGRGEDKEEEEDYMGELSQFLLPETSVPSNPKISSKKIANNKLQAVQSSKKKKAVSWHEQRRLEKERQQKEEDEQTLARIEAPIPQ SNIGFKLLKQMGYTPGSALGKEGSGRAEPVGIEIRRTRVGIGREDPHKEKRKREEFEAEWKKRNDEAMMADFGSRQKLQWRSKRVVVNFTKAKAALDQLE NKEFVEPKKSEDEEEGEQEEEEEEVVTEEDLHQILMKLRDEHRYCLFCGFQLVTTQLHPVPDCLVHELVTMFQYETAEALLSNCPGIDEDDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57910			D111/G-patch domain-containing...		Lus10021033 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	1.4	0.8990
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026876 [exp]	1.7	0.8806
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	2.0	0.8907
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	5.3	0.8714
AT1G53210			sodium/calcium exchanger famil...		Lus10028144 [exp]	6.0	0.8392
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	6.7	0.8710
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	8.4	0.8360
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10037181 [exp]	8.7	0.8179
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	10.2	0.8334
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	10.8	0.8382

Compare expression of checked genes

Lus10021033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.