Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41850 303 / 4e-104 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003892 [exp] 432 / 3e-154 AT5G41850 297 / 2e-102 alpha/beta-Hydrolases superfamily protein (.1) Lus10003902 [exp] 370 / 1e-130 AT5G41850 231 / 3e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10023100 [exp] 192 / 8e-59 AT5G41850 172 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10032373 [exp] 188 / 2e-58 AT5G41850 163 / 6e-50 alpha/beta-Hydrolases superfamily protein (.1) Lus10003893 [exp] 59 / 2e-10 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092800 [exp] 338 / 1e-117 AT5G41850 314 / 1e-109 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021037 pacid=23182388 polypeptide=Lus10021037 locus=Lus10021037.g ID=Lus10021037.BGIv1.0 annot-version=v1.0 ATGGCTGATTCTACTCGGGCGAAGCGAAGACGACAGAACGAAGACTCAAAGAACACATCACCATCAACTTCGCCAGTGGTTGTGTTCGCTCACGGAGCTG GTGCTCCCTCGTCTTCTGAATGGATGATTAGGTGGAAGGAGTTGTTGAAGAACAGCATTGATGCTGTTGAAGTGGTCACTTTTGATTATCCCTATTGTTC GGGTGGGAAGAAGAGGGCTCCCCCAAAAGCTGAGAAATTGGTGGAGTTCCACAAGGGTATTGTTAAAGAAACCACTGACAAGTACCATGGGCATCCTTTG ATTTTGGCTGGAAAATCTATGGGATCCAGAGTGAGCTGCATGATAGCCGCCGATGTGGAGATTGCAGCTTCAGCGATAATATGCTTGGGATACCCGCTCA AGGGTACAAATGGAAAGATTCGGGATGAAACACTTCTCCAACTTGATATCCCCGTAATGTTCGTTCAGGGGAACAAAGATGCCCTTTGCCCTCTGGAAAA GCTCGAAACAGTTCGAAAGAAGATGAAATGCGAGAGCGAGTTGTATGTGATTGATGGAGGAGACCACTCCTTCAAAATAGGGAAGAAGCATCTGCAGGAA AATGGGTTGACACAAGATGAGGCTGAAATGAGTGCTGTTCAGGCTCTTGGCTTGTTCATTTCCAGTCGTCTCAGAGAAAGCAACAGGCTCACTTGGGCAT GCATACTAAGTCTTTCAGTTGATTTGATCACTGTCGCTGCCGCTGCTGCTGTCGCTGCCACTGCCACTGTCATTTCCGCACTTGTTCTTGTTCTTCTCAG ACTTGAAGGACCCGACTGCAGAAGACATTGTCTGAGATCCATGGTGTGCGGGGTGGTCTTTACTGGTGAAGAATCCGGAGATGAAAGGGTTTCTTCGGAT GGAGTTTATTGTGTTTCGAAATGGTGA
AA sequence Show only first row Show all	>Lus10021037 pacid=23182388 polypeptide=Lus10021037 locus=Lus10021037.g ID=Lus10021037.BGIv1.0 annot-version=v1.0 MADSTRAKRRRQNEDSKNTSPSTSPVVVFAHGAGAPSSSEWMIRWKELLKNSIDAVEVVTFDYPYCSGGKKRAPPKAEKLVEFHKGIVKETTDKYHGHPL ILAGKSMGSRVSCMIAADVEIAASAIICLGYPLKGTNGKIRDETLLQLDIPVMFVQGNKDALCPLEKLETVRKKMKCESELYVIDGGDHSFKIGKKHLQE NGLTQDEAEMSAVQALGLFISSRLRESNRLTWACILSLSVDLITVAAAAAVAATATVISALVLVLLRLEGPDCRRHCLRSMVCGVVFTGEESGDERVSSD GVYCVSKW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	0	1
					Lus10033943 [exp]	2.6	0.8496
AT1G54680			unknown protein		Lus10033821 [exp]	3.7	0.8869
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	4.9	0.8381
AT1G13380			Protein of unknown function (D...		Lus10034324 [exp]	4.9	0.8203
AT2G44590		ADL1D	DYNAMIN-like 1D (.1.2.3)		Lus10030928 [exp]	5.5	0.8576
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	5.7	0.8591
AT1G54680			unknown protein		Lus10018965 [exp]	6.5	0.8850
AT1G71150			unknown protein		Lus10007946 [exp]	6.7	0.8415
					Lus10012544 [exp]	7.1	0.8692
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10041471 [exp]	7.2	0.8160

Compare expression of checked genes

Lus10021037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.