Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06780 290 / 3e-97 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT3G12140 287 / 6e-96 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G13020 284 / 6e-94 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 236 / 8e-75 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT5G20030 42 / 0.0003 Plant Tudor-like RNA-binding protein (.1) AT3G57970 41 / 0.0008 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004188 [exp] 598 / 0 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031223 [exp] 283 / 5e-93 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 268 / 3e-87 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031221 [exp] 251 / 8e-81 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 242 / 2e-77 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10000040 [exp] 219 / 4e-72 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10018749 [exp] 46 / 3e-05 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10024835 [exp] 46 / 3e-05 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10014715 [exp] 43 / 0.0002 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G047600 [exp] 357 / 4e-123 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 351 / 9e-121 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 293 / 7e-97 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 292 / 1e-96 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G013800 [exp] 288 / 9e-95 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 276 / 6e-90 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 264 / 3e-85 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 49 / 3e-06 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 46 / 3e-05 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 45 / 5e-05 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Lus10021038 pacid=23182289 polypeptide=Lus10021038 locus=Lus10021038.g ID=Lus10021038.BGIv1.0 annot-version=v1.0 ATGGAGGCCCAAATTCATCTCTTGGAGCAAGAAGCTTACTGTGCTGTACTGCGTGCTTTCAAGGCTCAATCTGATGCTCTTACCTGGGAAAAGGAAGGTT TAATTACAGAACTCCGCAAAGAGCTCAGGGTATCGGATGATGAACACAGAGAGCTTCTCTCCAGGGTTAACGAGGATGACATCATCCGCCAGATTAGGGA ATGGAGAACCACAGGTGTTCCTGAAGCTACAAGGTTCGGTGTGCCGCAGAGGGTTCATGAGATGATACCCAGCCCTACCATTTCGGCTGCTCGTAAGAAA CAGAAGACATCTCAAGGGAGTCAGCTGCTACCTACTCTATCCTCTGTGAAAGCTATGCAGCTTCCCTCTCAATTTACTACTCGAGCGAGGTACTTCACTA CCCACAATTCCCGTAGCTCTTCTGGTGCGCTTGTGATTGATGAACCTCCGGAAGCACTGCTTGGACGAAAGGGCCGGCATGCTCTTGTGTACGATATAGG TACAGAAAATGAGACATGGGAATGGGTTGATCTGAATGAGATATCCCCAGAGGACATACGATGGGATGGAGAGGATCCAGCGATTAGCTATCACGGTGGT GGCCAAGGTGGCGCCAGTCGTGCGATTAGGAAACCCATGAATCGCCGTGTTTTTCTTTCAGGTTCAGGACCATTGAGGGGATCTACAAAGTTCCCAGCCA GAAGGGAGCATTTAGCGACACACAATGGTTTTGCAGCGAAGGTTTCTGATGATATCGAATTACTGAACACTGAGACACTAGTTAAAGAGGTTGAAAAGGT TTTCGGTGTAAGTCAACCAGATCCGCTTGAGCTTGAGAAAGCCAAAATGATGCTAAAAGAGCATGAGCAGGCACTTATGGATGCAATTGCAAGGCTTGCA GATGCATCTGATGGTGAAAGTGATGGAGAACAGCATTTCTTACACGGTCAACCAATGGAACGTTAG
AA sequence Show only first row Show all	>Lus10021038 pacid=23182289 polypeptide=Lus10021038 locus=Lus10021038.g ID=Lus10021038.BGIv1.0 annot-version=v1.0 MEAQIHLLEQEAYCAVLRAFKAQSDALTWEKEGLITELRKELRVSDDEHRELLSRVNEDDIIRQIREWRTTGVPEATRFGVPQRVHEMIPSPTISAARKK QKTSQGSQLLPTLSSVKAMQLPSQFTTRARYFTTHNSRSSSGALVIDEPPEALLGRKGRHALVYDIGTENETWEWVDLNEISPEDIRWDGEDPAISYHGG GQGGASRAIRKPMNRRVFLSGSGPLRGSTKFPARREHLATHNGFAAKVSDDIELLNTETLVKEVEKVFGVSQPDPLELEKAKMMLKEHEQALMDAIARLA DASDGESDGEQHFLHGQPMER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	0	1
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	1.0	0.8846
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	1.4	0.8783
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	2.2	0.8380
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	5.3	0.8233
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	6.3	0.8159
AT4G08310			unknown protein		Lus10028028 [exp]	10.7	0.8045
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	11.2	0.7776
AT5G52950			unknown protein		Lus10027565 [exp]	11.3	0.8229
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	12.7	0.8093
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	16.4	0.8141

Compare expression of checked genes

Lus10021038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.