Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19630 233 / 3e-77 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004187 [exp] 330 / 5e-116 AT5G19630 230 / 8e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10031220 [exp] 236 / 2e-78 AT5G19630 331 / 3e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10031797 [exp] 234 / 8e-78 AT5G19630 325 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013700 [exp] 248 / 3e-83 AT5G19630 324 / 9e-114 alpha/beta-Hydrolases superfamily protein (.1) Potri.T056064 [exp] 246 / 1e-82 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G212400 [exp] 246 / 1e-82 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G191700 [exp] 93 / 4e-23 AT5G19630 77 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02129 [flax] [poplar] Peptidase_S15 X-Pro dipeptidyl-peptidase (S15 family)
Representative CDS sequence Show only first row Show all	>Lus10021039 pacid=23182403 polypeptide=Lus10021039 locus=Lus10021039.g ID=Lus10021039.BGIv1.0 annot-version=v1.0 ATGGGGTCGCCAACGTTGGATAACTCCAGACATTCCTCATCATTGATGACACGTCCGAGGAGCGCCATGGAGTCATCGTTCGTGTCCACACGGGACGGGG TTGTTCTCCATGCCCGCCTCTTCAAGCCCGCCGCCGACGACGAACCCGCCGCACCCACCGCCGTCGTCCTCGTCCACCCTTACTCCAAGCTCGGCGGCTG CCAGGTCATCATGCAGGGCATTGCCTCCAGGCTCTCCATCAAGGGCTTCACCGCCATCACGTTCGACATGAGAGGCGTCGGAAGATCCACCGGGAAGTCC TCCGTCACCGGCATTTTCGAAATCGAGGACGTCGTCGCCGTCTGTACCTGGGTCTCCGAGAATTTGCCCGTCGAGAGAATCTTGTTGGTGGGTTCCTCCG CAGGAGCTCCAATAGCAGGTTCAGCGCTTGATCAGCTGGATAAAGTGGTGGGATATGTGAGCATAGGCTACCCTTTCGGATTTGCTGCTTCGTTTCTATT TGGGAAGCATTACAAACCGACGCTGAAGTCCAGGAAGCCGAAGCTGTTCATCATGGGGAGTGCGGATTGGTTCACCAGCGTGAGGCAGCTGAAGAGCAAG GTCAAGAGTTGCGAGGGTCGAGCCGAGATGCATCTGATACAAGGAGCAGGCCATTTCGAACTCGAAGGCCCCGATTTCGATTCCGCCATTGTCAATATGA TTGTATCCTTCCATGAAACACTATAG
AA sequence Show only first row Show all	>Lus10021039 pacid=23182403 polypeptide=Lus10021039 locus=Lus10021039.g ID=Lus10021039.BGIv1.0 annot-version=v1.0 MGSPTLDNSRHSSSLMTRPRSAMESSFVSTRDGVVLHARLFKPAADDEPAAPTAVVLVHPYSKLGGCQVIMQGIASRLSIKGFTAITFDMRGVGRSTGKS SVTGIFEIEDVVAVCTWVSENLPVERILLVGSSAGAPIAGSALDQLDKVVGYVSIGYPFGFAASFLFGKHYKPTLKSRKPKLFIMGSADWFTSVRQLKSK VKSCEGRAEMHLIQGAGHFELEGPDFDSAIVNMIVSFHETL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10021039 [exp]	0	1
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	2.6	0.9272
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	5.5	0.8904
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	7.3	0.8827
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	8.0	0.8628
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	9.8	0.8481
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	10.6	0.8424
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	10.7	0.8589
					Lus10021242 [exp]	11.5	0.8451
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	13.3	0.8272
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	15.5	0.8333

Compare expression of checked genes

Lus10021039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.