Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51130 109 / 3e-28 Nse4, component of Smc5/6 DNA repair complex (.1) AT3G20760 107 / 9e-28 Nse4, component of Smc5/6 DNA repair complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039205 [exp] 112 / 4e-29 AT1G51130 369 / 1e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10013735 [exp] 110 / 1e-28 AT1G51130 368 / 2e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10042459 [exp] 102 / 8e-26 AT1G51130 342 / 3e-115 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10004185 [exp] 74 / 2e-16 AT3G20760 94 / 1e-22 Nse4, component of Smc5/6 DNA repair complex (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046802 [exp] 125 / 3e-34 AT1G51130 361 / 7e-123 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.T028032 [exp] 109 / 3e-28 AT1G51130 395 / 3e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.003G212600 [exp] 109 / 3e-28 AT1G51130 394 / 9e-136 Nse4, component of Smc5/6 DNA repair complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08743 [flax] [poplar] Nse4_C Nse4 C-terminal
Representative CDS sequence Show only first row Show all	>Lus10021041 pacid=23182385 polypeptide=Lus10021041 locus=Lus10021041.g ID=Lus10021041.BGIv1.0 annot-version=v1.0 ATGACTGGAACCGCTGAGCACGACCCGGAACCGGCCTCCGGTTACTTGTACGACGACTTGGATGACTCAAGAACCCTCCGCTCCCGATACCTCGCCGTCA AGAATCTCATCCACGATGAGGCAGAGGAGATCGGAACCGCGGAATCTGACAAGTTGAACACCATCCTCGACCACCTCGACATCCTACACATGCGAGGTAA TGAACTAGCTGATGATGTTGCTGAGAAAGAGAAGACTGGTACGGAAGGAGCAATGCGGACTACGTTCGACAGACTGAGGAAGGAAAAAAGAGTGGAGCTT GAACACCTAGTGCTGAACCGGAGCTCGTTTTCACAGACGGTCGAGAATGTGTTTGCCCTGTCGTTCCTTGTAGAAGAAGGAAGGGCTGAGATAATTGTAG ACGAAGAAAGCGGCCGCCACCTACTCCGAAGAACGCCCCATCTGCTGGCTCAGGTTGCCTCTGGTAAAGTCTCGTACCAGCAATTTGTCTTCCAATATGG ATACAGTGATTGGCAGTTACCTGATCTTTGTAAAATCTCTGCAGTTGATGTTGGGAAGGAGCTTATGCCAAACAGGATTCAAGTGAAGACAGAGCTGTAG
AA sequence Show only first row Show all	>Lus10021041 pacid=23182385 polypeptide=Lus10021041 locus=Lus10021041.g ID=Lus10021041.BGIv1.0 annot-version=v1.0 MTGTAEHDPEPASGYLYDDLDDSRTLRSRYLAVKNLIHDEAEEIGTAESDKLNTILDHLDILHMRGNELADDVAEKEKTGTEGAMRTTFDRLRKEKRVEL EHLVLNRSSFSQTVENVFALSFLVEEGRAEIIVDEESGRHLLRRTPHLLAQVASGKVSYQQFVFQYGYSDWQLPDLCKISAVDVGKELMPNRIQVKTEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10021041 [exp]	0	1
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10001149 [exp]	4.7	0.9646
					Lus10024992 [exp]	7.1	0.8930
					Lus10022108 [exp]	9.5	0.8895
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	11.0	0.8895
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10037756 [exp]	11.2	0.6930
					Lus10003272 [exp]	12.2	0.8895
					Lus10010826 [exp]	13.4	0.8895
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	14.5	0.8895
					Lus10030783 [exp]	15.5	0.8895
					Lus10036152 [exp]	16.4	0.8895

Compare expression of checked genes

Lus10021041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.