Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 311 / 2e-104 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004184 [exp] 566 / 0 AT3G57990 329 / 3e-111 unknown protein Lus10012013 [exp] 325 / 7e-110 AT3G57990 296 / 3e-98 unknown protein Lus10016270 [exp] 318 / 5e-107 AT3G57990 300 / 4e-100 unknown protein Lus10016269 [exp] 154 / 4e-46 ND 169 / 1e-52 Lus10012012 [exp] 153 / 8e-46 ND 164 / 2e-50 Lus10000401 [exp] 91 / 3e-22 AT3G57990 107 / 4e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191800 [exp] 314 / 2e-105 AT3G57990 299 / 1e-99 unknown protein Potri.016G046900 [exp] 304 / 4e-102 AT3G57990 345 / 3e-118 unknown protein Potri.003G088500 [exp] 76 / 5e-15 AT3G57990 58 / 5e-09 unknown protein Potri.001G145400 [exp] 66 / 7e-12 AT3G57990 80 / 3e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021042 pacid=23182422 polypeptide=Lus10021042 locus=Lus10021042.g ID=Lus10021042.BGIv1.0 annot-version=v1.0 ATGAAAGCCTCGCTCAAATTCCGCGAGGAGCAGAAGCCGCTGTTTCGAGCGAAACTGCCGCTGAGCATCATGGGCTTGTCATTCCAGTCGGGGATCGTTG CCGGCGAAGATAAAGAGCTCTCTCTCAATCTCTCCACCTTCTTCGAATCGGGACCGTCGTTCAAGGTCGCCTACCGTCCGAACGATTCGCAGAATCCATT CTCGCTTGTGCTCAAGACAGGTACGGGGCCATTTGGGTCGCCTTCGGCGGCGAGCCCCTTGGTGATGAGCGCGGAGTTCAATTTCGTTGGGAGTGGAAAC CCTAGCTTCATGCTTCACCTGAAGCCAAGGTTTGGGGATTTCTCGATTAAGAAGTCGCAGACGTCGTCGTATTTAGAGAAGTGGCAGAATGGGGTCGTTT CGAAGAAATGTTCGGAGACAGAAGAGGACAGATCGGTCGTCGTGGTGGAGAAGCCAGTGTTCAACGGTATCGGAGCCGGCGGCGGAGTTGAAATTGGCGG AGGAGGATTAGGGTTTAACGCTAAGAAGTTGACTAGTCTTCCACCGCCGACGTCGAATGCGCTCGCTGCTGGTTTATCTGGCGTCGAAGTCACAGCAATC ACGAGTTTCCCCTTGAGGAGTCACGCCCTGATGAGCTTCAGATGGGGGCTTAGGGTTCCCGCCGAGGGGCTCGACTCGATGGCCGCAGCGATCAATTTCA AGAAGATGCCTTTCCTTGTGATGAACAAGATCGGCATCGAGCACGTCTACCAATCTGATACGAAATCCGAAAAGGCTACCGCGGCCGCAAAAGCCAAGGA CGAAGTGGCTGAGACTTGTTTGGCAGTGAAGCAGCAGCTGGATACTCTGCAGTTTGAGAATTCGCAGCTGAGGAAAGCCATGGACGATCTGAGACAAGAG TTCAGCTCAACCAAGTACCTTTTGCCACCGTCAGCGCCTGAATCCAGCTTCAGCAGGTACAGAGAATCGGATAGGAACAGGGCAAGGAACTCGAGTGGGA AGCGGAATGAGAAGAGTGGTTCTTCAGTGGAAGAGAATGTGAGTGAAGAGCTGAAGAAAGCTCTGCAGGGAGCTTCAGCTGGAGTCAGCGGTGCTTGA
AA sequence Show only first row Show all	>Lus10021042 pacid=23182422 polypeptide=Lus10021042 locus=Lus10021042.g ID=Lus10021042.BGIv1.0 annot-version=v1.0 MKASLKFREEQKPLFRAKLPLSIMGLSFQSGIVAGEDKELSLNLSTFFESGPSFKVAYRPNDSQNPFSLVLKTGTGPFGSPSAASPLVMSAEFNFVGSGN PSFMLHLKPRFGDFSIKKSQTSSYLEKWQNGVVSKKCSETEEDRSVVVVEKPVFNGIGAGGGVEIGGGGLGFNAKKLTSLPPPTSNALAAGLSGVEVTAI TSFPLRSHALMSFRWGLRVPAEGLDSMAAAINFKKMPFLVMNKIGIEHVYQSDTKSEKATAAAKAKDEVAETCLAVKQQLDTLQFENSQLRKAMDDLRQE FSSTKYLLPPSAPESSFSRYRESDRNRARNSSGKRNEKSGSSVEENVSEELKKALQGASAGVSGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57990			unknown protein		Lus10021042 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Lus10008688 [exp]	1.7	0.7636
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	8.7	0.7570
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	11.4	0.7357
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	18.4	0.6679
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	23.2	0.6987
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	24.5	0.6638
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10000312 [exp]	25.0	0.6605
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	25.3	0.6398
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	25.5	0.7190
AT2G35790			unknown protein		Lus10023498 [exp]	26.5	0.7040

Compare expression of checked genes

Lus10021042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.