Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06770 190 / 2e-59 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G12130 181 / 7e-56 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G19360 53 / 1e-07 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G25970 52 / 4e-07 KH domain-containing protein (.1) AT1G32360 49 / 2e-06 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT1G33680 48 / 4e-06 KH domain-containing protein (.1) AT2G35430 46 / 2e-05 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT4G10070 44 / 0.0002 KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004183 [exp] 507 / 0 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10016272 [exp] 350 / 2e-121 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 205 / 3e-66 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012016 [exp] 92 / 2e-23 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012015 [exp] 75 / 5e-17 AT3G12130 66 / 1e-14 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10020998 [exp] 54 / 6e-08 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 54 / 7e-08 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10000486 [exp] 53 / 8e-08 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 53 / 8e-08 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191900 [exp] 349 / 3e-121 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.016G046600 [exp] 342 / 2e-118 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.001G013200 [exp] 325 / 2e-111 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 315 / 2e-107 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.004G169500 [exp] 60 / 4e-10 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 59 / 1e-09 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 57 / 4e-09 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.018G055300 [exp] 56 / 1e-08 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.001G140800 [exp] 54 / 6e-08 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.006G231800 [exp] 53 / 2e-07 AT2G25970 393 / 5e-128 KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10021043 pacid=23182370 polypeptide=Lus10021043 locus=Lus10021043.g ID=Lus10021043.BGIv1.0 annot-version=v1.0 ATGGATGCGAGGAAGAGAGCGAGGCCTGATGGCGCCGTCAACAACTACAATGGCGGGTTCAAGAAATCTAGACCTGAAATGGACCCGTTATCAACCGCTG TAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGTACTGCTGGGTGTCCATTTGGCGACGGCTGCCACTTTCAGCACTGCGTTCCTGGAGGGTACAA TGCCGTTTCCCAAATCATGAACAGGTCATCATCTGCCACCCCCACGCCGAAACATATGCCACCACCACCGCAATCAGTCTCGAACGGTGCTGCTGCTAAT CCACCTGCAATAAAAAACCGCATGTGCAACAAATACAACTCTGCAGAAGGATGCAAGTTCGGCGACAAATGCCATTTCGCACACGGGGAGTGGGAGCTCA GAAGGCCTTTTGCTCCGTCTCACGACAATCACCTCCCCATAACTGGAGGACCTGGACCTCTTCCCGGTCGCATTATGAAGCGGATGGATCAGCCCCCCAC ACCTGCCGCACCCCCTCTTGCTGGCTTTGGTGATACAGCGACTGCCAAAATCAGCGTTGACGCTTCCCTTGCGGGACCCATCATCGGGAAAGGCGGCGTG AACTCTAAGCAGATATGTAGGCTGACGGGAGCCAAGCTGTCCATCAGGGATCATGAAACGGATCCCAACCTTAGGAACATCGAGTTGGAAGGGACGTTTG ATCAGATCGCTCAAGCTAGCGCGATGGTGAAAGAGGTTATCGCAAACATTGTCCCGGTAGGTGTCGGACGCCAAGCTGTCAAACCTTCTGGCTTCTCAGG GGAGAAGCATCATCCTGGAAGCAATTACAAGACCAAGATATGCGACAATTTCACGAAAGGAACTTGCACCTTTGGTCAGAGATGCCATTTTGCTCATGGT GCTGCTGAATTGCGCACGTCTTGA
AA sequence Show only first row Show all	>Lus10021043 pacid=23182370 polypeptide=Lus10021043 locus=Lus10021043.g ID=Lus10021043.BGIv1.0 annot-version=v1.0 MDARKRARPDGAVNNYNGGFKKSRPEMDPLSTAVGSKSKPCTKFFSTAGCPFGDGCHFQHCVPGGYNAVSQIMNRSSSATPTPKHMPPPPQSVSNGAAAN PPAIKNRMCNKYNSAEGCKFGDKCHFAHGEWELRRPFAPSHDNHLPITGGPGPLPGRIMKRMDQPPTPAAPPLAGFGDTATAKISVDASLAGPIIGKGGV NSKQICRLTGAKLSIRDHETDPNLRNIELEGTFDQIAQASAMVKEVIANIVPVGVGRQAVKPSGFSGEKHHPGSNYKTKICDNFTKGTCTFGQRCHFAHG AAELRTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	0	1
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031279 [exp]	2.0	0.8694
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031846 [exp]	4.2	0.8472
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	5.7	0.8568
AT5G64950			Mitochondrial transcription te...		Lus10028912 [exp]	5.8	0.8274
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020917 [exp]	6.9	0.8524
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	7.1	0.8582
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	7.9	0.8394
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	9.2	0.8499
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10034422 [exp]	10.1	0.7754
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10015414 [exp]	16.0	0.8096

Compare expression of checked genes

Lus10021043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.