Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06760 72 / 2e-15 AtLEA4-5, LEA4-5 Late Embryogenesis Abundant 4-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004182 [exp] 149 / 2e-44 AT5G06760 87 / 1e-21 Late Embryogenesis Abundant 4-5 (.1) Lus10016273 [exp] 100 / 7e-26 AT5G06760 120 / 3e-35 Late Embryogenesis Abundant 4-5 (.1) Lus10012018 [exp] 96 / 2e-24 AT5G06760 123 / 3e-36 Late Embryogenesis Abundant 4-5 (.1) Lus10012009 [exp] 82 / 1e-19 AT5G06760 71 / 9e-17 Late Embryogenesis Abundant 4-5 (.1) Lus10016266 [exp] 75 / 4e-17 AT5G06760 68 / 1e-15 Late Embryogenesis Abundant 4-5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046350 [exp] 74 / 8e-16 AT5G06760 101 / 2e-27 Late Embryogenesis Abundant 4-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03760 [flax] [poplar] LEA_1 Late embryogenesis abundant (LEA) group 1
Representative CDS sequence Show only first row Show all	>Lus10021044 pacid=23182399 polypeptide=Lus10021044 locus=Lus10021044.g ID=Lus10021044.BGIv1.0 annot-version=v1.0 ATGCAGTCCATGAAGGAAACCGCTGCCAATATCGGCGCATCTGCCAAGGCCGGCATGGAGAAGACCAAAGCCGTCGTTCAAGAGAAGGTGGAGAAGGTTT CGGCGCACAATCCGGTGCAGAAGGAAATGGCAAAGGAGAAGAAAGAACAGAGGATCGCTGAGGCTGAGGCGATGAAGCACAGCGCCAAAGCGCACAACGC CGCGGCGAAGCAAGGCGGGCAAGTCCTCGGCGCTGACTACACCACCGGCTCTACCGACTATATCACTCCTGGACACCATCAGGGATACAGCACCGGAGCT ACTGACTACATCACTCCTGGCCACCACCATGGGACAGGGGGTGCCCACCGGGGGACGGGGCCCCCCCCCGCCGGTGGCGCTGGGTACGGTACAATCGGAG ATTACGGAACCACTGGTACCGGAGGAGCGGCGGGAGTGTTGGGCCATTCTGCCGGCGGTCATCACGGTTACGGGACAGGGCAGACCCACGGCGGTGGTAT TGTGGGAGAGGCGGTGTCGACTTTGACCGGCGGGCACCACGGTCATCCGACCGGGGCTGGGACCGGGACCCACCACATGCCAGGGCAGCAGCACGGTGGG ATTGTGGGAGAGGCGGTGTCGAAGGTTGCTGGCGGGCATCACGGTCACTCTACCGGGACAGGGCAGCGCTCGCTCTCCCGGGAGAGGCCAGCAGCGCCAC GGTGGGTTTGTGGAAGGGGCAGTGACGAGGTTGACTGGCGACAAAGCCGGTCACAATACCGGGGCGGGAGGGACGGGTTACGGGACAGGGGGCAGACTGA ATTGATGCTTTTGCAGCATCAGCTGTGA
AA sequence Show only first row Show all	>Lus10021044 pacid=23182399 polypeptide=Lus10021044 locus=Lus10021044.g ID=Lus10021044.BGIv1.0 annot-version=v1.0 MQSMKETAANIGASAKAGMEKTKAVVQEKVEKVSAHNPVQKEMAKEKKEQRIAEAEAMKHSAKAHNAAAKQGGQVLGADYTTGSTDYITPGHHQGYSTGA TDYITPGHHHGTGGAHRGTGPPPAGGAGYGTIGDYGTTGTGGAAGVLGHSAGGHHGYGTGQTHGGGIVGEAVSTLTGGHHGHPTGAGTGTHHMPGQQHGG IVGEAVSKVAGGHHGHSTGTGQRSLSRERPAAPRWVCGRGSDEVDWRQSRSQYRGGRDGLRDRGQTELMLLQHQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10021044 [exp]	0	1
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	1.0	0.8636
AT5G13100			unknown protein		Lus10015761 [exp]	1.4	0.8455
AT5G62280			Protein of unknown function (D...		Lus10041061 [exp]	3.9	0.7031
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	8.3	0.7389
					Lus10000543 [exp]	11.0	0.7107
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10017550 [exp]	12.5	0.7292
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	14.1	0.7365
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	19.9	0.6928
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	20.4	0.6928
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	21.0	0.6928

Compare expression of checked genes

Lus10021044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.