Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 489 / 4e-174 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 220 / 3e-68 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 209 / 1e-63 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 200 / 3e-60 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 79 / 5e-16 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004181 [exp] 731 / 0 AT3G12120 494 / 1e-175 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 710 / 0 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004180 [exp] 696 / 0 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 573 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 566 / 0 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 551 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 526 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 520 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 511 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192000 [exp] 488 / 2e-173 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 487 / 7e-173 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 476 / 6e-168 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 453 / 9e-160 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 407 / 2e-142 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.016G117500 [exp] 223 / 9e-69 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 221 / 5e-68 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 220 / 1e-67 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 218 / 1e-67 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.006G101500 [exp] 219 / 2e-67 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10021046 pacid=23182350 polypeptide=Lus10021046 locus=Lus10021046.g ID=Lus10021046.BGIv1.0 annot-version=v1.0 ATGAACAACAGAACCACCACGAAGCTGCTGCCGCTGTCAAAACCGCCGTTCACTCTGGCCGACATCAAGAGAGCCGTACCGCCACACTGTTTCAAAAGAT CCCTCGTCAAATCATTCGCCTACCTAGCCTACGACATCACCGTCATCACAATCCTCTACCACATCGCCAACACATACTTCTACCTCCTCCCCAAACCTCT CTCCTACGTGGCGTGGCCCGTCTATTGGGCCGCCCAAAGCTGCTTCTTCGTCGCTGTATGGATGGTGGGTCACGATTGCGGCCACCATTCATTCAGCGAC TACCAGTGGGTGGACGACACTGTCGGATTCGTCGTCCATTCGTTCCTCCTCACCCCTTACTTCTCGTGGAAGCACACCCACCGCAGCCACCACGCCAACA ACGGATCTCTAGAACGCGACGAATCTTTCGTCCCCAAGACCAAAGACGAAGTCAGGTGGCACTTCAAGTACCTCGACCACCTACCGGGGCGAATCTTCTA CGTGTTCTTTACTCTAACCCTAGGATGGCCTCTCTACTTGATGTTCAACATCACCGGAAGGCCGTACAAGGATGGATTCGCTAGCCATTTCTACCCCATG TCGCCTATGTACGAGGACCATGAGCGGTTTGGAGTAGTCCTGTCCGACATGGGAATGCTCGCTATGTGGTTTACGCTCTACAAGCTCTCGGTGGCGTTCG GAGTCACTTGGGTTCTCTGTGTGTACTTTATTCCACTAGTTTTACAAAACGCGTTGTTTGTTACGATCACTTACTTGCACCACACGCATCCAAACGTGCC TCGTTATGACTCTTCGGGGTGGGGTTGGATGAGGGGGTCGTTGGTGACCGTGGATAGAGACTATGGGTTTTTGAATAAAGTGTTCCATAACGTGACGGAT ACTCACGTGGCGCACCATCTGTTCACGCATATGCCTCATTACCACCAATTGGAAGCTACCAAGGCGTTCATCCCGATTTTGGGAGAGTACTACCAGGCTG ATCCAACACCGTTCTATAAAGCATTGTGGAGAGAAATGAAGCACTGTGTTTATGTCGAACAAGACAAAGATGCAAATGTCGATCAGAACAAAAGAGGTGT GTATTGGTACAAAACAAAGTCGTGA
AA sequence Show only first row Show all	>Lus10021046 pacid=23182350 polypeptide=Lus10021046 locus=Lus10021046.g ID=Lus10021046.BGIv1.0 annot-version=v1.0 MNNRTTTKLLPLSKPPFTLADIKRAVPPHCFKRSLVKSFAYLAYDITVITILYHIANTYFYLLPKPLSYVAWPVYWAAQSCFFVAVWMVGHDCGHHSFSD YQWVDDTVGFVVHSFLLTPYFSWKHTHRSHHANNGSLERDESFVPKTKDEVRWHFKYLDHLPGRIFYVFFTLTLGWPLYLMFNITGRPYKDGFASHFYPM SPMYEDHERFGVVLSDMGMLAMWFTLYKLSVAFGVTWVLCVYFIPLVLQNALFVTITYLHHTHPNVPRYDSSGWGWMRGSLVTVDRDYGFLNKVFHNVTD THVAHHLFTHMPHYHQLEATKAFIPILGEYYQADPTPFYKALWREMKHCVYVEQDKDANVDQNKRGVYWYKTKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021046 [exp]	0	1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	6.8	0.7609
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	11.0	0.7169
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10011274 [exp]	13.4	0.6926
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	13.5	0.7169
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10010040 [exp]	15.1	0.6860
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	15.6	0.7169
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	17.5	0.7169
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	19.1	0.7169
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	20.7	0.7169
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	22.1	0.7169

Compare expression of checked genes

Lus10021046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.