Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 502 / 9e-179 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 217 / 4e-67 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 206 / 5e-62 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 199 / 7e-60 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 79 / 9e-16 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004180 [exp] 746 / 0 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2) Lus10021046 [exp] 710 / 0 AT3G12120 489 / 5e-174 fatty acid desaturase 2 (.1.2) Lus10004181 [exp] 709 / 0 AT3G12120 494 / 1e-175 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 595 / 0 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 588 / 0 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 579 / 0 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 549 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 545 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 527 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046200 [exp] 508 / 0 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 502 / 8e-179 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 491 / 5e-174 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 465 / 2e-164 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 412 / 3e-144 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.008G069600 [exp] 218 / 7e-67 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 216 / 7e-67 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.016G117500 [exp] 218 / 9e-67 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 218 / 1e-66 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 216 / 9e-66 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10021047 pacid=23182447 polypeptide=Lus10021047 locus=Lus10021047.g ID=Lus10021047.BGIv1.0 annot-version=v1.0 ATGGTGTCCTCCGGCAAAACCATGAGCAACAAAACCACCACGAAGCGGCCGCCGGTGTCAAAACCGCCGTTCACTCTGGCCGACATCAAGAGAGCCGTAC CGCCACACTGCTTCAAAAGATCCCTCGTCAAATCATTCGCCTACCTAGCCTACGACCTCACCGTCATCACAATCCTCTACCACATCGCCAACACATACTT CCACCTCCTCCCCAAACCTCTCTCCTACGTGGCGTGGCCCGTCTATTGGGCTGCCCAATGCTGCTTTTTCGTCGCTTTATGGATGGTGGGCCACGACTGC GGCCATCATTCATTCAGCGACTATCAGTGGGTGGACGACACCGTTGGATTCGTCGTCCACTCGTTCCTCCTCGCCCCTTACTTCTCGTGGAAGCATAGCC ACCGCCGCCACCACGCCAACTCCGGATCTCTAGAACGCGACGAGTCGTTCGTCCCGAAAACCAAAGACAATATCACCTGGCACTTCAAGTACCTCGACCA CCTACCGGGGCGGATCTTCTACGTGGTCTTCACTCTAACCCTCGGATGGCCGCTCTACTTGATGTTCAACATCACCGGAAGGCCGTACAAGGACGGATTC GCCAGTCATTTCTACCCCATGTCGCCTATCTACGAGGATCACGAGCGGTTCGGAATATTCCTCTCTGATGTTGGCATGCTCGCTATGTGGTTCACACTCT ACAAGCTTTCCGTGGCGTATGGAGTCGGTTGGGTTCTTTGTGTGTATTTTATTCCGCTGGTTTTACAAAATGCGTTGTTTGTCACGATCACTTACTTACA CCACACGCATCTGAACTTGCCTCACTATGACTCTTCGGGGTGGGACTGGATGAGGGGGTCGTTGACGACTGTGGATAGGGACTATGGGTTTTTGAACAAG GTGTTGCATAACGTGACAGATACTCACGTGGCGCACCATCTGTTCACCCATATGCCTCATTACCACCAATCGGAAGCGACCAAGGCGTTCATTCCGGTTT TGGGGGAATACTACCAGGTTGATCCGACTCCGTTCTACAAGGCGTTGTGGAGGGAGATGAAGCACTGTGTTTATATCGAGCAAGATGAGGATGCGGATTC TGATAATAACAAAAAAGGCGTGTACTGGTACAAAACCAAGCTCTAA
AA sequence Show only first row Show all	>Lus10021047 pacid=23182447 polypeptide=Lus10021047 locus=Lus10021047.g ID=Lus10021047.BGIv1.0 annot-version=v1.0 MVSSGKTMSNKTTTKRPPVSKPPFTLADIKRAVPPHCFKRSLVKSFAYLAYDLTVITILYHIANTYFHLLPKPLSYVAWPVYWAAQCCFFVALWMVGHDC GHHSFSDYQWVDDTVGFVVHSFLLAPYFSWKHSHRRHHANSGSLERDESFVPKTKDNITWHFKYLDHLPGRIFYVVFTLTLGWPLYLMFNITGRPYKDGF ASHFYPMSPIYEDHERFGIFLSDVGMLAMWFTLYKLSVAYGVGWVLCVYFIPLVLQNALFVTITYLHHTHLNLPHYDSSGWDWMRGSLTTVDRDYGFLNK VLHNVTDTHVAHHLFTHMPHYHQSEATKAFIPVLGEYYQVDPTPFYKALWREMKHCVYIEQDEDADSDNNKKGVYWYKTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	0	1
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	2.2	0.9670
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	4.0	0.9571
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	6.5	0.9558
					Lus10025963 [exp]	7.7	0.9525
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	7.9	0.9500
AT5G40810			Cytochrome C1 family (.1.2)		Lus10041577 [exp]	8.3	0.9367
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10038057 [exp]	9.8	0.9521
AT5G09300			Thiamin diphosphate-binding fo...		Lus10020895 [exp]	11.1	0.9332
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	14.0	0.9447
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	14.4	0.9545

Compare expression of checked genes

Lus10021047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.