Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 245 / 2e-81 FAD2 fatty acid desaturase 2 (.1.2) AT3G11170 98 / 3e-24 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 95 / 2e-23 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT2G29980 92 / 3e-22 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004178 [exp] 348 / 9e-122 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 275 / 4e-93 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 275 / 6e-93 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 268 / 5e-90 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 265 / 5e-89 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 259 / 7e-87 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 254 / 8e-85 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10012007 [exp] 244 / 8e-84 AT3G12120 266 / 8e-90 fatty acid desaturase 2 (.1.2) Lus10029283 [exp] 244 / 8e-84 AT3G12120 266 / 8e-90 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046200 [exp] 259 / 9e-87 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 251 / 2e-83 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 252 / 3e-83 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 236 / 1e-77 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 183 / 1e-57 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.008G069600 [exp] 99 / 2e-24 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 97 / 9e-24 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 96 / 1e-23 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 95 / 3e-23 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 92 / 2e-22 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10021048 pacid=23182339 polypeptide=Lus10021048 locus=Lus10021048.g ID=Lus10021048.BGIv1.0 annot-version=v1.0 ATGTCCCCTATTTACAGCGACCGCGAGCGAGCCGAGGTATTCGCCTCAGATGTTGGCTTGCTCGCTGTCTGCTTCGCGTTGTACAAACTTATTATGGTCA AGGGAATGGCGTGGGTTTTTTGCGTCTATGGGGCTCCGGTCATGGTGGTGAATGGATTCTTCATTACCATCACTTACTTGCATCACACTCATCTCGCGGT CCCGCGATACGATTCGTCTGAATGGGATTGGTTGAGGGGAGCCCTGGCAACCATGGACAGGGACTTTGGCCTTTTGAACAAGGTGTTCCATAATGTTACA GATACTCACGTGACGCACCATCTGATTTCGACGATCCCTCATTATCATGCCATGGAAGCCAACAACGCAATTAGGCCCGTGTTGGGGGACTACTACCATA TCGACAGGACGCCGGTGGTTAAGGCGTTGTGGAGGGAGGCTAAGGAGTGTGTTTACATCGAGGCCGATGATGGTGAAAAGAACAAAGGCGTGTTCTGGTT CAATACCAAGCTCTAA
AA sequence Show only first row Show all	>Lus10021048 pacid=23182339 polypeptide=Lus10021048 locus=Lus10021048.g ID=Lus10021048.BGIv1.0 annot-version=v1.0 MSPIYSDRERAEVFASDVGLLAVCFALYKLIMVKGMAWVFCVYGAPVMVVNGFFITITYLHHTHLAVPRYDSSEWDWLRGALATMDRDFGLLNKVFHNVT DTHVTHHLISTIPHYHAMEANNAIRPVLGDYYHIDRTPVVKALWREAKECVYIEADDGEKNKGVFWFNTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021049 [exp]	1.0	0.9379
					Lus10014855 [exp]	2.0	0.8357
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001460 [exp]	4.9	0.8124
AT4G31980			unknown protein		Lus10038338 [exp]	6.9	0.7797
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	6.9	0.8600
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	10.3	0.8636
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	14.1	0.8160
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10042214 [exp]	19.1	0.8119
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10020312 [exp]	25.6	0.7632
					Lus10030676 [exp]	28.6	0.8206

Compare expression of checked genes

Lus10021048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.